Query= MSMg01no173_m24.b1 MSMg01no173_m24.b1 CHROMAT_FILE:
MSMg01no173_m24.b1 PHD_FILE: MSMg01no173_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:33 2005
(621 letters)
>mm_chr2_43414223_43415243
Length = 1021
Score = 1116 bits (577), Expect = 0.0
Identities = 607/617 (98%)
Strand = Plus / Minus
Query: 5 gaattcagagtcctacttccaaaatatccagtatcataaatactggacatctatgggatg 64
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gaattcagagtcctacatagaaaatatccagtatcataaatactggacatctatgggatg 762
Query: 65 ctgatgctgcattcatctgagtctgcaatgcggagtatctgtgatgtttattttcacaac 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ctgatgctgcagtcatctgagtctgcaatgcggagtatctgtgatgtttattttcacaac 702
Query: 125 acattaagctgaatctagcatgggtgctgttcaaaactgtcatggaagaggcttcaaagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 acattaagctgaatctagcatgggtgctgttcaaaactgtcatggaagaggcttcaaagt 642
Query: 185 tcctcttaatcttctccccttcctcttctattcaaccccagtcagaacagagtgttaaag 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 641 tcctcttaatcttctccccttcctcttctattcaaccctagtcagaacagagtgttaaag 582
Query: 245 gacagctgagatgataatgccctccgtatctgatcatactgctaccgtgtgtctttctca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gacagctgagatgataatgccctccgtatctgatcatactgctaccgtgtgtctttctca 522
Query: 305 caagactgtctatctctgtgaattttctcactctgtattctttctgtaaaacacgctgct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct: 521 caagactgtctatctctgtgaattttctcactctgtattctttctgtaaaacatggtgtt 462
Query: 365 tttatcccaatacattcagacctcaggaactcctcactgtcccaaatcaaatgctacatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttatcccaatacattcagacctcaggaactcctcactgtcccaaatcaaatgctacatt 402
Query: 425 cttgttctggtctgtcatgttatctctgctaaaagcagtctttcttcctttaagcaccag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cttgttctggtctgtcatgttatctctgctaaaagcagtctttcttcctttaagcaccag 342
Query: 485 taacctttacaagcatacatcttctaataatggatacatcctgtctggtactatgtttat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 taacctttacaagcatacatcttctaataatggatacatcctgtctggtactatgtttat 282
Query: 545 ttagggatacgtgtggatgaaaaagatagagcatgcttgctgtgcctgcaacttgatttt 604
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttagggatacgtgtggctggaaaagatagagcatgcttgctgtgcctgcaacttgatttt 222
Query: 605 aaattgcttaatgttgg 621
|||||||||||||||||
Sbjct: 221 aaattgcttaatgttgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_m24.g1 MSMg01no173_m24.g1 CHROMAT_FILE:
MSMg01no173_m24.g1 PHD_FILE: MSMg01no173_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:33 2005
(292 letters)
>mm_chr2_43288051_43288742
Length = 692
Score = 528 bits (273), Expect = e-154
Identities = 287/295 (97%), Gaps = 6/295 (2%)
Strand = Plus / Plus
Query: 1 tttaacactaaggagtctgctattgtagaggagaggaattgaacttatgtgcctggtacc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 195 tttaacactaaggagtctgctattgtagaggagaggaattgaactcatgtgtctggtacc 254
Query: 61 tcagagattattactatatactgtactcaataaataagccatatagtgtgtaatgtttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcagagattattactatatactgtactcaataaataagccatatagtgtgtaatgtttaa 314
Query: 121 aatatatttacatggctattatcattattattattattat------atcttcttcattta 174
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 315 aatatatttacatggctattatcattattattattattattattacatcttcttcattta 374
Query: 175 gtatatttttatattatttcacctcttccaattcttcccacccctctatctacccaacct 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtatatttttatattatttcacctcttccaattcttcccacccctctatctacccaacct 434
Query: 235 catgtttgttaatttattctctctcgctcagtgaaaagaacaaaacaaagcaaca 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 catgtttgttaatttattctctctcgctcagtgaaaagaacaaaacaaagcaaca 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
