TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAGGATGTTCGCTAGGAGAATGTTATACTTGCAGATTTGTCTAGT
ATTTTCAGAATTCAGATGTTATTATTCCCCTTGATGTTGTACTGCAAAAT
GTAAAAATACATTGTTATTAATTTGACTTTTCTAGAAAACATGCCATCTG
GTGAATCTGTTGAGGTTTGAGAATTATCTCAACATCATTTATTGTTCGAG
GAAGACATTACAACATTGTTTGACATTTTTACCACTTTTCTTTTATAGAA
AAATTTGAATACNGAAATTCTGGATTTTATATGATAAAATGTTGATCTAA
TATTTATACAGGGTTGTTTTTTTTTTCCCCCCCCCCCCCACCCTGGGCTA
AACTTGTTAATTTAATGGCAAACGCCCCCCCTTAATGTAAAAGGGAAAGA
ATTCAAAGGCCCCCTGGTAACCCCTTGTCCTACAACCTTTTTTGGAACTT
GAAAAAACCTCGCTGTTCCCTNTCTTAAACCCCCCGGAAAAACANCAAAT
GCGGTTTTNNNTTTCCAAGCNNNNNTTCCNNNCTTATATTTTTACTTTTT
TTCCCTTTCTTAAAAAAAAAAAAAACTGCGGGGAATTTGTTTATTTCTTT
ATNAATAAAAAATTTATTAAAATTCTAAAAGAAATTCTTNNNNNNNNNNN
ATCGTGCACTATTNNNNNNNNNTCTCTTNNNNTNNNNNCCNNNGNGTTTT
AGACCATGTCTAATTGATCTTACNTAANAAAAAGAAATAAAAATAAA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCCATTTGGTTTTCTATGAAGGACT
TGGCCCACAGAAAGTGAAGGCTGGATATCCCAAACTAGAAACTTATCCAG
GGATACTAAAACAAGAAGAGAATGAACACTCCAAATACTTTACAAATGTT
GGCCTCCCAAGCAACTAAAACAAGCTGAGAAGTCTCACAATTTATGTGAA
AAGAACAGAGCTGTGAAGCAAAGGACTTCTTTATGGAAAAAGATAAAGTA
ATGATATCATCTTAGTTTAGGACCTACAGGAAGAAACTTAGAGAAAAATC
ACTGGCACACTTTACTGGGTCATACACCCAACCCACCCTTGCACTACCAT
TAGGAAATAAAAGTATAGAAGATATGCATTTGAAAAAGAAGATCTGAAGG
ATTATTTTTGTTAGGGTAACATTTTTTTCCACTGTGTGAAGATATGTCTC
CTTTCTCACCTGCCTAAGGCATTCTCTGATTGGCTTTCATAAAGAGAAGA
ATGGCCTATAGCAATTCAGGAGAGAAGAGGTGGGACTTCTGTGTAAAGTT
AGGAATCCTGGGAAGGAGTCTGTGGTGGGAAATTTGATCCATCAGACAGA
CACAGAGGTAAGAGATTCATCAGTCAGTAAGAGTCAGAGGAAGTCAGATT
TATGAAACAGAGGAGAACTAATGAGCCATGTGGTAGAATATTGACT

Query= MSMg01no174_c20.b1 MSMg01no174_c20.b1 CHROMAT_FILE:
MSMg01no174_c20.b1 PHD_FILE: MSMg01no174_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:59 2005
         (255 letters)



>mm_chr2_46628112_46628766
          Length = 655

 Score =  447 bits (231), Expect = e-130
 Identities = 246/251 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaggatgttcgctaggagaatgttatacttgcagatttgtctagtattttcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaattcacaggatgttcgctaggagaatgttatacttgcagatttgtctagtattttcag 396

                                                                       
Query: 65  aattcagatgttattattccccttgatgttgtactgcaaaatgtaaaaatacattgttat 124
           ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aattcagatgttattattaagcttgatgttgtactgcaaaatgtaaaaatacattgttat 336

                                                                       
Query: 125 taatttgacttttctagaaaacatgccatctggtgaatctgttgaggtttgagaattatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taatttgacttttctagaaaacatgccatctggtgaatctgttgaggtttgagaattatc 276

                                                                       
Query: 185 tcaacatcatttattgttcgaggaagacattacaacattgtttgacatttttaccacttt 244
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 275 tcaacatcatttattgttcgaggcagacattacaacattgtttgaaatttttaccacttt 216

                      
Query: 245 tcttttataga 255
           |||||||||||
Sbjct: 215 tcttttataga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no174_c20.g1 MSMg01no174_c20.g1 CHROMAT_FILE:
MSMg01no174_c20.g1 PHD_FILE: MSMg01no174_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:59 2005
         (294 letters)



>mm_chr2_46456872_46457565
          Length = 694

 Score =  569 bits (294), Expect = e-167
 Identities = 294/294 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccatttggttttctatgaaggacttggcccacagaaagtgaaggctggatatcccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccatttggttttctatgaaggacttggcccacagaaagtgaaggctggatatcccaa 260

                                                                       
Query: 61  actagaaacttatccagggatactaaaacaagaagagaatgaacactccaaatactttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagaaacttatccagggatactaaaacaagaagagaatgaacactccaaatactttac 320

                                                                       
Query: 121 aaatgttggcctcccaagcaactaaaacaagctgagaagtctcacaatttatgtgaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgttggcctcccaagcaactaaaacaagctgagaagtctcacaatttatgtgaaaag 380

                                                                       
Query: 181 aacagagctgtgaagcaaaggacttctttatggaaaaagataaagtaatgatatcatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagagctgtgaagcaaaggacttctttatggaaaaagataaagtaatgatatcatctt 440

                                                                 
Query: 241 agtttaggacctacaggaagaaacttagagaaaaatcactggcacactttactg 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttaggacctacaggaagaaacttagagaaaaatcactggcacactttactg 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)