TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGCATTTTCCGGAGAAATCTGCGGTACGGCGTTTTATCAGACA
GCAGATGGCTGCTGCTGTTTACCACCCATGAGACTTTAAGTGACCGTTCA
TCCTTAGCTCTGCATGGTGCATGAGCACTGACTTTAATGTACAGTGTCAT
GTGTTGGTTTACCTCTATGCCACTTGACTTTAAATACTCTTCTCCGTGGT
CCTAAAATTCCATTCAGCTAACACTTAGGTTTGAATGATTTTATATCAAA
CATTTAAATACTTTCTTATAAATAATACTTTGATATACCTTTGAAATGTA
GACAAATAAATGGTTTTATAGCCAAATGGAATAACTTCTGAACTCTACTT
ACTTTTCAGGAATTAACGCATTTGCATGCGGTTCTTGCTACGAAAAAAAA
TAATCGTCAGGATGAAGTTATAAATTTGTTGAATGATGTTGTGAACACTC
ACTTTTCACACTTGGAAGACCTCCCGCTCGGCATACAGTATTTTGAGAAG
CTCAACCCTGACTTCTTACTAGAAGTTGTTACCGAGTATCTGAATCTCTG
TCCAATTCAGGTAGGGAGCTCTGCCTCTTATCCACAAAGGTGTTCCATGG
GTCCCATAGACAGTGCTAAGAAGTTCTCTTGAACATGTGCAAGTGTATCT
GTAATTAATATTN

ATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGAAGAGAGCTTGAGAGAAATGTCTAAGTATT
AACAACCATTGGTAATATATTTATAAATGAGGAAATAAGCATATTGTTGT
TATAAAACAATATAATTATTTATATAACTATTGTTCTTAGGTAGGAAGGG
AAATTAAGATTATATATGCACATACATATATACATACAAATAACATTATA
CAGACATATATATATATGTATATATATATGTGTGTGTGTGTGTGTGTGTG
TGCGCGTACCGAGGGTTTTTGGGGAACGGAGGGGGAAAGGGGGGGGGGAG
GGTTTTTATTTTCCCCCCCCCCCCCCCCGGGGTTTCTGTATTTTGGGGGT
CGGGATGGGGGCCGCCTGAAAAAACATAAACGGGCCCCCCTCGGCGGGGG
GCGGTCGGGGGGGGCGCCGGGGGAGGAAACAACAAACCAAGGGAAAGAAA
CAAGGGACAAAGGGGGGGGAAAAAAACAAAAAAAAAAACGGAAAAACCGC
GGCAAGAACCACCCCACGGAAAACACCGCCAACACCAAAAAAAGGACACA
CGGCGAAAACCCCGAAGAACCCCCGACGTGCGGAAGGGGCGAGACGTTGG
GGCGGCACATGGGGGGTAGCGGGCGCGCGCTATCTGCGGGGACTATCGAG
CACTAAACACCCTGCCGCAAGGGGGCAGACACGGGGAACAAAGAAAAGCG
GAGGGAACATAAGAAACAAAACAGN

Query= MSMg01no175_d17.b1 MSMg01no175_d17.b1 CHROMAT_FILE:
MSMg01no175_d17.b1 PHD_FILE: MSMg01no175_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:16 2005
         (641 letters)



>mm_chr2_66072800_66073840
          Length = 1041

 Score = 1172 bits (606), Expect = 0.0
 Identities = 630/638 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctgcggtacggcgttttatcagacagcagatggctgctgctgtttaccacccatgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||
Sbjct: 838 aatctgcggtacggcgttttatcagacagcagatggctgctgctgtttataagccatgag 779

                                                                       
Query: 61  actttaagtgaccgttcatccttagctctgcatggtgcatgagcactgactttaatgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 actttaagtgaccgttcatccttagctctgcatggtgcatgagcactgactttaatgtac 719

                                                                       
Query: 121 agtgtcatgtgttggtttacctctatgccacttgactttaaatactcttctccgtggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agtgtcatgtgttggtttacctctatgccacttgactttaaatactcttctccgtggtcc 659

                                                                       
Query: 181 taaaattccattcagctaacacttaggtttgaatgattttatatcaaacatttaaatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 taaaattccattcagctaacacttaggtttgaatgattttatatcaaacatttaaatact 599

                                                                       
Query: 241 ttcttataaataatactttgatatacctttgaaatgtagacaaataaatggttttatagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 598 ttcttataaataatactttgatatacctttgaaatgtagacaaataaatggctttatagc 539

                                                                       
Query: 301 caaatggaataacttctgaactctacttacttttcaggaattaacgcatttgcatgcggt 360
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 538 caaatggaataacttctgaactctacttacttttcaggaattaatgtatttgcatgcggt 479

                                                                       
Query: 361 tcttgctacgaaaaaaaataatcgtcaggatgaagttataaatttgttgaatgatgttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcttgctacgaaaaaaaataatcgtcaggatgaagttataaatttgttgaatgatgttgt 419

                                                                       
Query: 421 gaacactcacttttcacacttggaagacctcccgctcggcatacagtattttgagaagct 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaatactcacttttcacacttggaagacctcccgctcggcatacagtattttgagaagct 359

                                                                       
Query: 481 caaccctgacttcttactagaagttgttaccgagtatctgaatctctgtccaattcaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caaccctgacttcttactagaagttgttaccgagtatctgaatctctgtccaattcaggt 299

                                                                       
Query: 541 agggagctctgcctcttatccacaaaggtgttccatgggtcccatagacagtgctaagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agggagctctgcctcttatccacaaaggtgttccatgggtcccatagacagtgctaagaa 239

                                                 
Query: 601 gttctcttgaacatgtgcaagtgtatctgtaattaata 638
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 238 gttctattgaacatgtgcaagtgtatctgtaattaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)