BAC Information

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BAC

Clone NameMSMg01-175E07
Chromosome2 (Build37)
Map Location 169,039,925 - 169,040,584
singlet/doubletsinglet
Overlap genenone
Upstream geneDpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175E07.T7 (MSMg01no175_e07.b1)MSMg01-175E07.TJ (MSMg01no175_e07.g1)
ACCAG370309AG370310
length722741
length of high quality
(start - end)
315 (47 - 361)660 (72 - 731)
definitionCHROMAT_FILE: MSMg01no175_e07.b1 PHD_FILE: MSMg01no175_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:19 2005CHROMAT_FILE: MSMg01no175_e07.g1 PHD_FILE: MSMg01no175_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCCGCATTTTTGGAAGATAGGTGGGAAACAGGGAGAAGGACTG
ACCGGCTCTTGTAGTACAAGGCCAATTGGCTTTTTTATTTGGGTGGGAGG
CAGTGAAGGGCTTGCCCTTTCAATAGTACGTCTCCAATCTCTCTCCCCCC
TATTAATTAAGTTAAATAAGGCAACACTTAACTGAGGTGATCAAATGATT
TTCTCATCCGTAGATGAGTGGGCTTTTAACCTTGGCTTGGGTGGACATGG
ACCCGATTCCTCCCGTGGGTAAAACCCACACATGTGGCTCTTGGTACCTT
TTGGGGAGGTATTTTTTTAGCCCCACCCCCCTTTTTATTTTTAACCAAAA
TATGATACCAACCTCTTTTAAACCGGGTTTATCTCACAGGAAACTCAGAA
ATGGTCAAGCTGGACCTTCCCTTGCAGTAGTTCTGCACCAAGCGGTGCCC
ATACTGAATTTGTACAATCACAAACCAGTATGCACAGTTCTGAGTGCTGT
GCAGCTCCTAAAGGAGAATTATCAACCTCAGAATTAGCAAAGCCTAAGCA
AGAATTATGTCGTTAATAACACCACGATTTGTGGGTAAAATAGGAGCTGG
AAGTCGTTCCTCCTCATCCCTGTTTTTTCCACAGCCTATTGAGCTAAGGA
CACCTTGCGGTAACAGCAAGGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATAGTGAGAAGGAAATGTGGGTGAACTAA
TAAAAGCAGGGTATGTATGGTAGGGGCTCTGTCAAGAGATCTCTTGGCTA
CCATTAATCAAGGAGAAGGAAGATTACAGGAACCAAAATTAAATCCTGTC
TTTGTGCCTCAAATCAATCATTGGGTCAAAGGGAGTTATGTAAAGTGTGG
GGCGGGGCCTGCCTGGAAGCCTGGCTGAACTTTAAATGACATGGCCAGAG
GGTGCTGGGGCACATGCCTAAAGTCCTAGCACAGGGGACAGGAGGCTCAA
ACAAGTGGGTCTTGAGTTTATAGTCAGCCTGGGCTACACTGGGGAGGCAT
AGAGAGATCCCACCTCAAAAAGACCAACAACAACCAAAACAAACAATTAC
AGCAAGTACCAGAGGCAGCCATAGGAGTTACAAGAATAAACAAGGGGGCC
AGAAGATAAGAGCTCTTCTCTGCCCGCTCTTCCTGGGGACACAGGCTCAG
TCCCCAGCACCCACATGGAGGCTCACAACTGTCTGTAACTCCAGTTCCAG
AGGATCTGATACACACACATACAGACATACATCCAGGCAGAACAACAGAG
CACATACAATAAAAACAAACAAATCATTCTTTANAAAGGGCAATGGAGAT
AGTTCAATCTATAAAGCATGCAACCCAGGCTCTGTCATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_e07.g1 MSMg01no175_e07.g1 CHROMAT_FILE:
MSMg01no175_e07.g1 PHD_FILE: MSMg01no175_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:19 2005
         (660 letters)



>mm_chr2_169039725_169040784
          Length = 1060

 Score = 1270 bits (657), Expect = 0.0
 Identities = 659/660 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagtgagaaggaaatgtgggtgaactaataaaagcagggtatgtatggtaggggctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagtgagaaggaaatgtgggtgaactaataaaagcagggtatgtatggtaggggctctg 260

                                                                       
Query: 61  tcaagagatctcttggctaccattaatcaaggagaaggaagattacaggaaccaaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagagatctcttggctaccattaatcaaggagaaggaagattacaggaaccaaaatta 320

                                                                       
Query: 121 aatcctgtctttgtgcctcaaatcaatcattgggtcaaagggagttatgtaaagtgtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcctgtctttgtgcctcaaatcaatcattgggtcaaagggagttatgtaaagtgtggg 380

                                                                       
Query: 181 gcggggcctgcctggaagcctggctgaactttaaatgacatggccagagggtgctggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcggggcctgcctggaagcctggctgaactttaaatgacatggccagagggtgctggggc 440

                                                                       
Query: 241 acatgcctaaagtcctagcacaggggacaggaggctcaaacaagtgggtcttgagtttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgcctaaagtcctagcacaggggacaggaggctcaaacaagtgggtcttgagtttat 500

                                                                       
Query: 301 agtcagcctgggctacactggggaggcatagagagatcccacctcaaaaagaccaacaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcagcctgggctacactggggaggcatagagagatcccacctcaaaaagaccaacaac 560

                                                                       
Query: 361 aaccaaaacaaacaattacagcaagtaccagaggcagccataggagttacaagaataaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccaaaacaaacaattacagcaagtaccagaggcagccataggagttacaagaataaac 620

                                                                       
Query: 421 aagggggccagaagataagagctcttctctgcccgctcttcctggggacacaggctcagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagggggccagaagataagagctcttctctgcccgctcttcctggggacacaggctcagt 680

                                                                       
Query: 481 ccccagcacccacatggaggctcacaactgtctgtaactccagttccagaggatctgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccagcacccacatggaggctcacaactgtctgtaactccagttccagaggatctgata 740

                                                                       
Query: 541 cacacacatacagacatacatccaggcagaacaacagagcacatacaataaaaacaaaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacacacatacagacatacatccaggcagaacaacagagcacatacaataaaaacaaaca 800

                                                                       
Query: 601 aatcattctttanaaagggcaatggagatagttcaatctataaagcatgcaacccaggct 660
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatcattctttaaaaagggcaatggagatagttcaatctataaagcatgcaacccaggct 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)