BAC Information

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BAC

Clone NameMSMg01-175F15
Chromosome2 (Build37)
Map Location 122,562,078 - 122,562,367
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4
Downstream genePldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175F15.T7 (MSMg01no175_f15.b1)MSMg01-175F15.TJ (MSMg01no175_f15.g1)
ACCAG370367AG370368
length715739
length of high quality
(start - end)
291 (126 - 416)---
definitionCHROMAT_FILE: MSMg01no175_f15.b1 PHD_FILE: MSMg01no175_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:25 2005CHROMAT_FILE: MSMg01no175_f15.g1 PHD_FILE: MSMg01no175_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCTTGTTATTCCATAAAATATTTTTAACATTTTAACTTACTGTAA
CAAAATCACCTAAATAAATAAGCACTTTGTACCACATTCATCTTGCTTTT
CTCTCTGATCTTTTCCTTCTTTTTCTCTTACAGCTTGCAATTCAATGTGC
CACTTGTTTGTTAAGAACCCTCTGTATATGACACAGAGCTCAAAGCAACT
TCTAAAACTTGATTGCAAAGAACACAACAGTTTATTGTGTCATGTTATGT
CTTTTGAAGGGTCTTTAGTTTTCCCATTTTCTTTTACGTATCAAAGTTAA
ACACTCCATATACTTTAATGCAATACCTTTTAAGATTGAACTAGACACCT
TAGTTATGCTAAAAACACACTTCTAGTTCCTATCCACCAGAAACATTGCT
AGGCACCAAATGTTATAGTTTGTGTTAGAGTTTGTTCTTGAGGTTACATA
TTATGCATTGAAAAATGTATAACATTGTATTGTCCAGACAATGATCTACA
ATAGCCAAAGTTTGAGTTTTGAGTGAATGTTTATTAAATATACAGGAAGC
CAAAGTAAAAGAATAACCAGCATAATGTTGGCTGGCGTGTGTGGATGATG
CTGATATATCACCCCCCGTTCCCTAAATTTATCTAAAATACCAGCTCATA
CACTCTTTATTAATG
GACAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAAGGTTAAAAAACATGCCAATTGGGG
TAGGAAAGGGAAAATAAAAAACCCCACAACATATGGTGATCTATAGGACA
CATGAATGCAAGCTTAAAGCACCGAGTAACTACCCATAAAACACAATAAA
ATCACACACGCTCGAGAGATCTCCCATTAATAGTTTAATGACACGTGAAA
CATTTAGAAAAATAAATAATATGAGCCAAAGACCCCGACGAAAAAAAATC
ATATCCAGGACTCATATCAGTGATATAAAGTTAAAGAACCAGAAAATCTA
TTACAAAGACAATTTTTTTATCCCCCCCGCCACCAAAAGTTAGCTTGTTG
ATAAAATCAAGGACGCCGCCCAAGCTTTAGACAATTTAACCCACTATTGC
GAGAGAAGATCCAATTAATAGAATTAGGGATGAATGTCGGATAGCTACAA
TAGACAGTTAAGAAAATCCTGAGACCAACATAGACCTACTTGAATTTTTT
TTTATTCCACTAGCATGGGACACCTAAACTAAATGTATACATTCTCTTTA
TATTTACGACCCACTATCTTTTACTACTGAGTAAGGGAACCATTCTAAAC
CTACCACTAAATCTCTAATGTCGTAAAAACACCCGCACTTCGAAACCTTT
CTTCCCCCCCAAACAACAGGCTTAGGGGCCACATGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_f15.b1 MSMg01no175_f15.b1 CHROMAT_FILE:
MSMg01no175_f15.b1 PHD_FILE: MSMg01no175_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:25 2005
         (291 letters)



>mm_chr2_122561878_122562568
          Length = 691

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtaccacattcatcttgcttttctctctgatcttttccttctttttctcttacagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttgtaccacattcatcttgcttttctctctgatcttttccttctttttctcttacagct 431

                                                                       
Query: 61  tgcaattcaatgtgccacttgtttgttaagaaccctctgtatatgacacagagctcaaag 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 430 tgcaattcaatgtgccacttgtttgttaaggaccctctgtatatgacacagagctcaaag 371

                                                                       
Query: 121 caacttctaaaacttgattgcaaagaacacaacagtttattgtgtcatgttatgtctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caacttctaaaacttgattgcaaagaacacaacagtttattgtgtcatgttatgtctttt 311

                                                                       
Query: 181 gaagggtctttagttttcccattttcttttacgtatcaaagttaaacactccatatactt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 310 gaagggtctttagttttcccattttcttttacgtatcaaagttatacactccaaatactt 251

                                                             
Query: 241 taatgcaataccttttaagattgaactagacaccttagttatgctaaaaa 290
           ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taatgtaataccttttaagattgaactagacaccttagttatgctaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)