BAC Information

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BAC

Clone NameMSMg01-175F20
Chromosome2 (Build37)
Map Location 5,439,526 - 5,439,830
singlet/doubletsinglet
Overlap geneCamk1d
Upstream geneFrmd4a, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292
Downstream geneLOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175F20.T7 (MSMg01no175_f20.b1)MSMg01-175F20.TJ (MSMg01no175_f20.g1)
ACCAG370377AG370378
length690708
length of high quality
(start - end)
311 (45 - 355)280 (94 - 373)
definitionCHROMAT_FILE: MSMg01no175_f20.b1 PHD_FILE: MSMg01no175_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:25 2005CHROMAT_FILE: MSMg01no175_f20.g1 PHD_FILE: MSMg01no175_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGTACATGCCACCATGCCTGACTTTTGTCCATTTTTAAGTGTCGG
TTCTGGGAATTGAAGACAGCTCTTATGTTGATGCACTGTGCTGCCCAAGG
TACTGGGTCCTGCTGAAAGAATGTCTATCTGAATCCAGTTGCTGCTCAGG
CCACAGGATCTGCAGTGGCCAGTCCCCTTCTCACAGGCAGCCTACTGGAG
CATGACCTAGGACTCTAACAATCCAAGTTCCAGGATTTTTTGCCTGGGGA
AGTGAGTTTATGTCATAGCGGGTACTCAGAGGCCTCACTTTCTCCCTGTT
ATTTTTATTCCTGTCTGCAAATTAGAAAGCCAGGCTACAAGGCTATGTAG
TGAAACCACTCCATCCTTGGAAAGCTCTAAGACAAGACTCTTATCATGGG
GCCCTGCTCTCCTCTCTTCAAAGCCTTCTCCATGCCCCAAGTCTTTCTTG
GTGCTGGGGTCTGAACCCTCCTCAGAGCTCCTGCTATGCTGTTGTCTGTC
TGTCTATCCACTGTGTCAAAGAAATTCTTTTAATAAACTTCTTACTCCCC
AGGATCCATATTAGGGTCCTTCTTGAACCTTTTATATAAACACTATGGCC
TCTGACAGTCATTGTGATAACTGGTAACAACAAAATGGTC
NNCCCACCCNNNNCCCATCGATGATAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTGG
GACAAGGTTTTATAGGAAATAGGAGCAGGTGAGGGGGCCCCCATCCTGGC
AAGCATCTAATTGAATGACTATCGTAAGCCGACAGGTGGGTGTTCTGAAA
CAAAACCATGAATAATCACAAATGGTCTGAAAGTACATCTAAAACAATCA
GACTAGTTTGATTAACTGTTGCTAGGAAGTAGCTAGGGAGTGATTCTGGG
GTATGGACCAAGGACAGGCCGTGGGGTCCTTCCAGGCACTTGTGTGCAGC
TTGGGTTTAGTTGCTGGTCAATTNNTTAGTTTTTCCCGTTTCTTGCCCTG
GTTGGTTGGTTGGTTGTTTTTTCNGNNTTTNNNNNAAAAAAAAAAAAAAA
TTTTTGGGGGTGGGGGGTGTGTTTNNTTTTGTTTGTGGGTTNTTTTATTT
ATTAGTGTGATATATAGATTTGTATATTTTATATTATTTTTGTTATTTTA
GTAAGAGATTATATTTTATTAATTTAGGATATATTAAATTTTATTTATTT
TATATTAAATGAATTTAAATGTTTTTTAGGAAATTAGTATAATGAAATAT
ATTTTTTTATTTAATTCAGTGATTTATTTAGGAGATTTATTTGTAATTAA
AAAAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_f20.b1 MSMg01no175_f20.b1 CHROMAT_FILE:
MSMg01no175_f20.b1 PHD_FILE: MSMg01no175_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:25 2005
         (311 letters)



>mm_chr2_5439323_5440033
          Length = 711

 Score =  551 bits (285), Expect = e-161
 Identities = 300/305 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacgtacatgccaccatgcctgacttttgtccatttttaagtgtcggttctggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggaattcacgtacatgccaccatgcctgacttttgtccatttttaagtgtcggttctggg 449

                                                                       
Query: 64  aattgaagacagctcttatgttgatgcactgtgctgcccaaggtactgggtcctgctgaa 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aattgaagacagctcttacgttgatgcactgtgctgcccaaggtactgggtcctgctgaa 389

                                                                       
Query: 124 agaatgtctatctgaatccagttgctgctcaggccacaggatctgcagtggccagtcccc 183
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 388 agaatggctatctgaatccagttgctgctcaggccacaggatctgcagtagccagtcccc 329

                                                                       
Query: 184 ttctcacaggcagcctactggagcatgacctaggactctaacaatccaagttccaggatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttctcacaggcagcctactggagcatgacctaggactctaacaatccaagttccaggatt 269

                                                                       
Query: 244 ttttgcctggggaagtgagtttatgtcatagcgggtactcagaggcctcactttctccct 303
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 268 ttttgcctggggaagtgagtttatgtcaaagcgggtactcggaggcctcactttctccct 209

                
Query: 304 gttat 308
           |||||
Sbjct: 208 gttat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)