BAC Information

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BAC

Clone NameMSMg01-175F24
Chromosome2 (Build37)
Map Location 31,569,078 - 31,569,730
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2
Downstream geneAbl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175F24.T7 (MSMg01no175_f24.b1)MSMg01-175F24.TJ (MSMg01no175_f24.g1)
ACCAG370383AG370384
length695713
length of high quality
(start - end)		660 (36 - 695)280 (92 - 371)
definitionCHROMAT_FILE: MSMg01no175_f24.b1 PHD_FILE: MSMg01no175_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:26 2005CHROMAT_FILE: MSMg01no175_f24.g1 PHD_FILE: MSMg01no175_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGGT
CTCCCTGACAACTTAGTAAGACAGGGCATCATGCATCAACCCCTCAGACC
ACAGAAAATTTTCACAAGGTAACAACTCCCAAATGAGCAACTCCTGCTAA
AGAACTGAGTAGAGGAACATCAGGCTTCAGAACAGCTGGCCAATCAGCTG
CTTGGACTAGTAGCTAGGCATAGCACGATTCTACTAGGGCCTGTAGTCTT
GGAAAAGATAAAACGTGTCCAAACTTGGTGTCAGATCCAGAACACAATGT
ACTTGATTGGCCCTCAAAAACAAGCCAAAGGAAACACAGTGCCACCATAG
TTAGGAACCTAAAGGCTCCAGATCATGGCACATGTCCATCAGAATTCAAC
TCCACTCCACCCCAATGAACTAACCACACCGGTGGAATAAAATGCAGGGT
AAAGCCCCTCTGTAGGGAGGGAGCATAGTCTAGGGAAAGAGCTTGTGGAA
AACAGTCACTTGTGTAGGGGAGAAGAGCCCTTCTCCAATCCTTCAGCTGG
GTCAGTTTATCTATATGCCTTAAAGATCTGCTGTCCCCCAAAGTGACAGT
TACCGTGCTGTCCCTCTCACAGCATGCTTCCCCACCCAGCACCCTCCCCA
GCCATGACCTTCATCTGGNCATCCCATCTTCCAAGAGCCTTTCAG

NTTCTTCCCNNNNCCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAG
ACCAGGCTGGCCTCAGACTCGGACATCTGTTTCTGCCTCCTGAGTATTGG
GGGGTTGGAGGCTTTTTGCACTGCTACCCAGCTTATGAGAATTATTTATT
TATTTTCCAAGCAGAGTTTATTTTTGTAACCCTCACTGTCTTGGAGCTAG
CTCTGTAGATCAGGCTAACCTTGAACTCTCAGGGATCCACCTGCCTCTGC
CTGCCTCTGCCATCCTAGTGAAGTTTTAAGGATTGCTGAGACTTGCTTGG
GGAGGTGGGGGTGGAGATACCTTTTGTTATATCCCCCCCACCCTGCAGCG
AGGAAAAGGAAATATTCCTTTGGGTTTCTTTTTGCCAGATATTTGATTTT
TCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGG
CCTTGAACTCAGAAATCCGCCTGCCTTTGCCTCCCAAGTGCTGGGATTAA
AAGCGTGCGCCACCACCGCCCAGCTTCTTTGGGTTTCTTATTTATGAAGT
ACACTGCTACCTTAAGTGGTAATGAGCCCATTAGAGATTGGTGTGTTGCT
TCTTAGTGGCAACAGCTAGAAGTCCATACTACCATTGAGAAATGATTTGA
AGGGAATTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_f24.b1 MSMg01no175_f24.b1 CHROMAT_FILE:
MSMg01no175_f24.b1 PHD_FILE: MSMg01no175_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:26 2005
         (660 letters)



>mm_chr2_31568874_31569930
          Length = 1057

 Score = 1193 bits (617), Expect = 0.0
 Identities = 646/658 (98%), Gaps = 7/658 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggtc--tccctgacaacttagtaagacagggcatcatgcatcaacccctcag 62
           ||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaattctaggtcagt--ctgacaacttagtaagacagggcatcatgcatcaacccctcag 800

                                                                       
Query: 63  accacagaaaattttcacaaggtaacaactcccaaatgagcaactcctgctaaagaactg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 accacagaaaattttcacaaggtaacaactcccaaatgagcaactcctgctaaagaactg 740

                                                                       
Query: 123 agtagaggaacatcaggcttcagaacagctggccaatcagctgcttggactagtagctag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agtagaggaacatcaggcttcagaacagctggccaatcagctgcttggactagtagctag 680

                                                                       
Query: 183 gcatagcacgattctactagggcctgtagtcttggaaaagataaaacgtgtccaaacttg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcatagcacgattctactagggcctgtagtcttggaaaagataaaacgtgtccaaacttg 620

                                                                       
Query: 243 gtgtcagatccagaacacaatgtacttgattggccctcaaaaacaagccaaaggaaacac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 619 gtgtcagatccagaacacaatgtacttgattggccctcaaaaacaagccaaaggaa--ac 562

                                                                       
Query: 303 agtgccaccatagttaggaacctaaaggctccagatcatggcacatgtccatcagaattc 362
           |||||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 agtgccaccaaag-caggaacctaaaggttccagatcatggcacatgtccatcagaattc 503

                                                                       
Query: 363 aactccactccaccccaatgaactaaccacaccggtggaataaaatgcagggtaaagccc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aactccactccaccccaatgaactaaccacaccggtggaataaaatgcagggtaaagccc 443

                                                                       
Query: 423 ctctgtagggagggagcatagtctagggaaagagcttgtggaaaacagtcacttgtgtag 482
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 442 ctctgtagggagggagcatagtctagggaaagagcttgtagaaaacagtcacttgtgtag 383

                                                                       
Query: 483 gggagaagagcccttctccaatccttcagctgggtcagtttatctatatgccttaaagat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggagaagagcccttctccaatccttcagctgggtcagtttatctatatgccttaaagat 323

                                                                       
Query: 543 ctgctgtcccccaaagtgacagttaccgtgctgtccctctcacagcatgcttccccaccc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgctgtcccccaaagtgacagttaccgtgctgtccctctcacagcatgcttccccaccc 263

                                                                     
Query: 603 agcaccctccccagccatgaccttcatctggncatcccatcttccaagagcctttcag 660
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 262 agcaccctccccagccatgaccttcatctggccatcccatcttccaagagcctttcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1057
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1047
Effective search space:   680550
Effective search space used:   680550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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