BAC Information

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BAC

Clone NameMSMg01-175G08
Chromosome2 (Build37)
Map Location 141,521,319 - 141,521,635
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175G08.T7 (MSMg01no175_g08.b1)MSMg01-175G08.TJ (MSMg01no175_g08.g1)
ACCAG370399AG370400
length734748
length of high quality
(start - end)
321 (40 - 360)285 (70 - 354)
definitionCHROMAT_FILE: MSMg01no175_g08.b1 PHD_FILE: MSMg01no175_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:28 2005CHROMAT_FILE: MSMg01no175_g08.g1 PHD_FILE: MSMg01no175_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATT
CCATGTAATCCCGTTCCTCTGACAAGACTAACTGTTAATGTTCCCACCAA
TACCCAGTTCTCTTTTTGTACTCAAAACCACTGCCCATTGCAATACAAAT
AATATTTTCCTACTGTCTTCTATATTGTGAACACTTGGGTTGTCTCTTTC
TACTGCTGCTTATTCATGTCAACAGTCATATATCCCATGTACAATTTCTT
CTTTAATATACTTTTTGGAGAAAATGCTTAAGTCTGGGGCAGGAAATGTA
TGTGATAAGCTAGAGCTACATCACTCAACAGAAAGTGACAAATGAACTGG
GCACTATTGTTTTTATATCCCCCCCCCTGACTCAATAAGTTGAATAGGCT
TACATTATCCACCCCCACCACAAAAAAAAAAAAAGGGATATCACAATGTA
ACGAATAACTATGTCCCAAAGAATTCTAGGTCTATTCATATATTTCTTAG
TGATATGTAAAAGTAAATTTATTAGTTACCTGACAATTATTAAGAACAAA
CTCATTATTTCCAAAACTGAAAACTGGAAAATATGAAGTAGTTTCTCTGA
CTTTCTTACCGAGTTGTAATTCTGAATAACCTAATAACTGATGAAAGGAA
AGGCTTTTAAAAATACAAGTACTACAATCTTTATCTAGAAAAGTGTTTGC
ATAATACATTTCCTTTTAGAAAGTTACAATTACT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGGCATCCTGGAGATGCCAGAAGGACTGGCA
CCTGAGTTAGTGGTCTCCCTAAGAAATATTAATTCATATCCACTATAGTG
GGCAGAGTCTAGTTAGCTACCTAGGTAGGGGGAAAAAGGGCAGAGAAATG
ATAAAATTAGCTGTTTTTCTCTCCTTCAGAATGTTGGCATAGGTTGTGTC
CTGTCCCTAGACTTAAGGGTTTTAAGTTCTCTGGCCTTGATCATGACTTG
CACCATCTACCCATCTCTGTCAGCTCTCCAGTTTTCAAGTTTGTACTGAA
TCATTATATTGTTTTTCCCCTCCCCCTACGCTCGTTGATGGAAGATTATG
GGACTCCTTACCCCCCATAATTATATGTGATAACACCGTTAATAAAATTG
ATCTGTGTAATTGTCCATATATCTGTTCATCCATTTTATCTGCTTTGCCG
CTTTGAAGAGCACTGTTCATTGAAATAAGAGACCATCTCTGATACACTTC
CCTAAAATCTGTGTAACACATATACACACACACGCACTCACACTCACTCC
CTCTCCACCCTCCTTTGACCGTTATTCTCAGAAAAGTCTTTCTGTGGCAC
TGGGGTGCTCTGCTGAGCCTAATTTAACAGTTGTGGAACAAATAATCTTG
GCAAAGCTAGGGAGGTATTTTGTGTACAATTGATTTCTGCTATAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_g08.b1 MSMg01no175_g08.b1 CHROMAT_FILE:
MSMg01no175_g08.b1 PHD_FILE: MSMg01no175_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:28 2005
         (321 letters)



>mm_chr2_141521213_141521935
          Length = 723

 Score =  511 bits (264), Expect = e-149
 Identities = 303/324 (93%), Gaps = 16/324 (4%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccatgtaatcccgttcctctgacaagactaactgttaatgttcccaccaataccc 66
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaattccatgtactcttgttcctctgacaagactaactgttaatgttcccaccaataccc 364

                                                                       
Query: 67  agttctctttttgtactc------aaaaccactgcccattgcaatacaaataatattttc 120
           |||||||      ||| |      ||||||||||||||||||||||||||||||||||||
Sbjct: 363 agttctc------tac-cagacagaaaaccactgcccattgcaatacaaataatattttc 311

                                                                       
Query: 121 ctactgtcttctatattgtgaacacttgggttgtctctttctactgctgcttattcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctactgtcttctatattgtgaacacttgggttgtctctttctactgctgcttattcatgt 251

                                                                       
Query: 181 caacagtcatatatcccatg---tacaatttcttctttaatatactttttggagaaaatg 237
           ||||||||||||||||||||   |||||||||| |||||||||||| |||||||||||||
Sbjct: 250 caacagtcatatatcccatgtactacaatttctcctttaatatactctttggagaaaatg 191

                                                                       
Query: 238 cttaagtctggggcaggaaatgtatgtgataagctagagctacatcactcaacagaaagt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cttaagtctggggcaggaaatgtatgtgataagctagagctacatcactcaacagaaagt 131

                                   
Query: 298 gacaaatgaactgggcactattgt 321
           ||||||||||||||||||||||||
Sbjct: 130 gacaaatgaactgggcactattgt 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 723
Length adjustment: 9
Effective length of query: 312
Effective length of database: 714
Effective search space:   222768
Effective search space used:   222768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)