BAC Information

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BAC

Clone NameMSMg01-175I09
Chromosome2 (Build37)
Map Location 21,848,206 - 21,848,517
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175I09.T7 (MSMg01no175_i09.b1)MSMg01-175I09.TJ (MSMg01no175_i09.g1)
ACCAG370489AG370490
length717729
length of high quality
(start - end)
316 (47 - 362)594 (75 - 668)
definitionCHROMAT_FILE: MSMg01no175_i09.b1 PHD_FILE: MSMg01no175_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:37 2005CHROMAT_FILE: MSMg01no175_i09.g1 PHD_FILE: MSMg01no175_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAACTCCCACTCCCGTTAGCTCCCTCCCAGTTGCAGGTGTTATGG
GTATAAAAAGAAGAAAACTGAGTGGGAATGTGACTCAGTGAGGTGGCTTT
CATAAGTCATGATCCATGTTGATGTGGGACATTGGGATCATCCATTCCCC
TATAAGTAACACTAAAGTTTCTATACTAAATTGACTGGTTCAGGTGTTTA
GACTTGGATGCAATCCTTTCTTTGGTCTGGAAACTTGGCTGGGATGAATA
GACATTTCTTTATACCTCATGATCAATAACTCACTGTAATGTAAACAGTT
GTTATATGTTATTTTTTTTCCACCCCCACCATTAAGAAATCGATCTGTCC
ACATCCTGCACAGGCGCGCCACACAAAACAACCTGTTCTTCTTGGATACT
TGTTTTCTTGTGATTGGTTGAATCTAGGAAATACAGGAACCAGGGGATTC
AGAGGTAGGGTGTTCTTTGTTATTTCTTGTTCTTTTTAAGCAGTTTGAAA
AACAACCCTTGAAACTGATGAATGCTTAAGACAGAGGAGCAAACACAATA
CTCTGGAAGACCTGGGATGATTGTTGATTTTATGTATACAAGATTTCTCT
TATTTGAAGGCTAGAGAGATACCTCAGTGGCTAAGAACATGGCAGCTCTT
GGAGAGGACGCCGTTCA
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAA
GGACACATGCTCCACCACCCTCATAGCAGCCTTATTTATAATAGCCCAAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTC
AAGATTTTCTAGAACATTTTTTGTGTTTGTAGTCTAGCTTGTAATTTTTT
GACATCATTCTTGCTCAGATAAACTCTACTTAATTTGGCTAGTCTAAAAT
ATTCCCCTCTTGATGCCATCTATGAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_i09.b1 MSMg01no175_i09.b1 CHROMAT_FILE:
MSMg01no175_i09.b1 PHD_FILE: MSMg01no175_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:37 2005
         (316 letters)



>mm_chr2_21848177_21848892
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaactcccactcccgttagctccctcccagttgcaggtgttatgggtataaaaag 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaattcaactcccactcctgttagctccctcccagttgcaggtgttatgggtataaaaag 282

                                                                       
Query: 65  aagaaaactgagtgggaatgtgactcagtgaggtggctttcataagtcatgatccatgtt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 281 aagaaaactgagtgggaatgtgactcagtgaggtggctttcataagtcatgatccatgct 222

                                                                       
Query: 125 gatgtgggacattgggatcatccattcccctataagtaacactaaagtttctatactaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gatgtgggacattgggatcatccattcccctataagtaacactaaagtttctatactaaa 162

                                                                       
Query: 185 ttgactggttcaggtgtttagacttggatgcaatcctttctttggtctggaaacttggct 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 161 ttgactggttcaggtgtttagacttggatgcaatcctttttttggtctggaaacttggct 102

                                                                       
Query: 245 gggatgaatagacatttctttatacctcatgatcaataactcactgtaatgtaaacagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gggatgaatagacatttctttatacctcatgatcaataactcactgtaatgtaaacagtt 42

                       
Query: 305 gttatatgttat 316
           ||||||||||||
Sbjct: 41  gttatatgttat 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)