BAC Information

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BAC

Clone NameMSMg01-175K12
Chromosome2 (Build37)
Map Location 93,964,789 - 93,964,977
singlet/doubletsinglet
Overlap geneHsd17b12
Upstream geneTrp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3
Downstream geneE530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175K12.T7 (MSMg01no175_k12.b1)MSMg01-175K12.TJ (MSMg01no175_k12.g1)
ACCAG370581AG370582
length728756
length of high quality
(start - end)
189 (125 - 313)234 (122 - 355)
definitionCHROMAT_FILE: MSMg01no175_k12.b1 PHD_FILE: MSMg01no175_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:47 2005CHROMAT_FILE: MSMg01no175_k12.g1 PHD_FILE: MSMg01no175_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGAATTCTCCTCTGATGATTGTTGTGGTCCATAAAGCTTAGAGGT
TCAAGTTATTAAAATTGGTCCGCATGGATGGAGAATAAAGAAGAATGTGT
CTGTCAGTTTGAGGAATAGCAGGCACACATGGAGCTGACTCCCTGTTGTG
TTCCATTTGGGAAACAGGGAGCAGTTTGGCCGGAGGGAAGCTGGTTTAGG
ACTAGAAAAACATAAAGTGGGATTTAGCATCATTAGATAAATGAGAAAGA
CATTGGAGCATTCTTGTTAGTATAGTTGCTAAATCCATCTGTGCAGGTTC
ATAAGGTTAATTTCCTAGCATAGGACATTCATGTTCTAGTGATGAGATTT
GGTACAGTATGCCCCCCGACAAGTTGTTTAACTTCTGAGATAGTTCATCA
ATAAAATTAGATATTATCACAACCCCCTTCCCTCCTTTCTTTTTTTGCTT
TTCATGGTGTTGTCTGCCCAGATCGCAATTACATCTTGTGGTCTGCTGAT
ACTACTTGTTAAGATGGCATTTGTAAAGCGTTTGTTTATGATTTACCCTT
GCTACACATTTACGAACCTCCTGCCTTATGTCACCAGCCTATTTTTAGCC
TGTGAAAACTTTCCTTGTTCCTATTTCCTAACCATCTATTACTGTCCATC
TTTTTTATCTTCCTGTCTGACTTTTCCT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCAGTTTCCATGAGTTTGCAAGTGTTCT
GTTGTTTCTGTTGTTGCTGCATATCCAGCTTTAATTTGTGGTGGTCAAAC
AGGATGTTATTTCAATTTGACATACAAAGACTTGCTTTGTATGTGGTCCA
TTTTAGAGAAAGTTCCATGATTTGCTGAGAAATTATATTCTTTCATTTGG
ATGGAATGCTCGGTAAATATATGTTAGGCACATTTGGCTTATGACTTCAT
TTAGTTCCACATGTGTGTTCAGTTTTTGTCTGGATGACCTGTCTACTGGC
AAGATTTTTTTACTGACCCCCCTCACTATCTGTGTGTGAGAGTGGATGTG
AGAGTGGACGCCCCCAAAAAAAAATACTAGTGTTTCTTTGTACAAATTTG
GGTCCCCTTGTATTTGGAGCATGCCTGTTTTCAATTTGAAATGTCCCCCT
GACGAAGTCTCCCTTTGACGATCCATTCTTGTCCTTTCCACCTTTCTATT
GTGACAACCTTCTTTTTATTAAATTTTCTGCTTTCCTAACAAATGTTCTC
TTCTTGTTCTTTCTTTTCTTTTATATATAATACTTTTCCTCCCATCTATC
TCTCCCCCTTTCTTTCTTTTCCTTTTTTTCGCCTTTCTTTCCTTTCTGCT
TTCCCCCGCCCACTCCCCCCTCTTTCTTCCACCCTCTATCCCTATTCTTC
ATCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_k12.b1 MSMg01no175_k12.b1 CHROMAT_FILE:
MSMg01no175_k12.b1 PHD_FILE: MSMg01no175_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:47 2005
         (189 letters)



>mm_chr2_93964589_93965177
          Length = 589

 Score =  358 bits (185), Expect = e-103
 Identities = 188/189 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatggagaataaagaagaatgtgtctgtcagtttgaggaatagcaggcacacatggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tggatggagaataaagaagaatgtgtctgtcagtttgaggaatagcaggcacacatggag 330

                                                                       
Query: 61  ctgactccctgttgtgttccatttgggaaacagggagcagtttggccggagggaagctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgactccctgttgtgttccatttgggaaacagggagcagtttggccggagggaagctgg 270

                                                                       
Query: 121 tttaggactagaaaaacataaagtgggatttagcatcattagataaatgagaaagacatt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 269 tttaggactagaaaaacataaagtgggatttagcatcattagattaatgagaaagacatt 210

                    
Query: 181 ggagcattc 189
           |||||||||
Sbjct: 209 ggagcattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)