Query= MSMg01no175_k21.b1 MSMg01no175_k21.b1 CHROMAT_FILE:
MSMg01no175_k21.b1 PHD_FILE: MSMg01no175_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:48 2005
(318 letters)
>mm_chr2_142280792_142281509
Length = 718
Score = 605 bits (313), Expect = e-178
Identities = 313/313 (100%)
Strand = Plus / Plus
Query: 5 gaattcttactgagttggcccaagcaactcagctcagcaatgcttgttaacagtggacat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttactgagttggcccaagcaactcagctcagcaatgcttgttaacagtggacat 264
Query: 65 tactgagcacctgctatatcctggcatctgcaaaaaagagtctgtgactcttcttagagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactgagcacctgctatatcctggcatctgcaaaaaagagtctgtgactcttcttagagc 324
Query: 125 cagaaatctcacctgctccagtcatgactggctttgttctcatttatatataggcattcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaaatctcacctgctccagtcatgactggctttgttctcatttatatataggcattcc 384
Query: 185 cctagcttacagaaagaatactatttccaagagattggactaatttgaggacttggctag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctagcttacagaaagaatactatttccaagagattggactaatttgaggacttggctag 444
Query: 245 agttcattttattatatccattttagagactatataaaatgaattgaaacttttaagatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttcattttattatatccattttagagactatataaaatgaattgaaacttttaagatg 504
Query: 305 acaatccttttaa 317
|||||||||||||
Sbjct: 505 acaatccttttaa 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no175_k21.g1 MSMg01no175_k21.g1 CHROMAT_FILE:
MSMg01no175_k21.g1 PHD_FILE: MSMg01no175_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:48 2005
(637 letters)
>mm_chr2_142444410_142445444
Length = 1035
Score = 909 bits (470), Expect = 0.0
Identities = 510/534 (95%), Gaps = 18/534 (3%)
Strand = Plus / Minus
Query: 104 actctgatgcagagtggactcctgcaccaggattccagcttgcctcctccagttgtggca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 actctgatgcagagtggactcctgcaccaggattccagcttgcctcctccagttgtggca 976
Query: 164 acatgcagcagccagcccagaccacctctcacaccatatctagtgcctgagtttgggagt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 acatgcagcagccagcccagaccacctctcacaccatatctagtgcctgagtttgggagt 916
Query: 224 gggtgcttgcctgccaagggcaactctgattgacagttgttactgtacctctgcacttga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gggtgcttgcctgccaagggcaactctgattgacagttgttactgtacctctgcacttga 856
Query: 284 acgtggcctttcccatagtactttcttctcattgtgcagcaagtcaatcccctgtggcac 343
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 855 acgtggcctttcccatagta----------------cagcaagtcaatcccctgtggcag 812
Query: 344 cacgcatgtgtggcttgcttatctggggactcctagagccaagccaacttgggacttccc 403
| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 811 gatggatgtgtggcttgcttatctagggactcctagagccaagccaacttgggacttccc 752
Query: 404 attgtgggtggcttaccagaccacccttaagtgactttcatctggtttcctttttcacca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 attgtgggtggcttaccagaccacccttaagtgactttcatctggtttcctttttcacca 692
Query: 464 aaatatgcttgtttttttttatacttcttccatgtggctggctaggtttcaaagatgttt 523
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaatatgct--tttttttttatacttcttccatgtggctggctaggtttcaaagatgttt 634
Query: 524 taagttatgtcatattgttttgttcatttggatttggatttaataatatctaaatactga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 taagttatgtcatattgttttgttcatttggatttggatttaataatatctaaatactga 574
Query: 584 cgtttacatagaatatcctgttcagtaaaaaggatctgtaggccaatcatgaga 637
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cgtttacatagaatgtcctgttcagtaaaaaggatctgtaggccaatcatgaga 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1035
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1025
Effective search space: 642675
Effective search space used: 642675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
