ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTCATACCCGGAGGCATCCGCTACGAGGCACCACTTATTGGGCTGT
AATTCCTGTGAGAAGGAGTTCCCTCGGTCATGATGAAGAAACATTTGCTG
AAGAGAAGAGCCCAAGAGCTGACACAGGCATAGATAGGAGCTAAAGTCCA
AGACATTTGTTGTTAGCAACATTTTCCTTGATCCTTAAGTTTAATACTTA
GACAAATATTCTTTATTATTAATGAGAAAAACATACAATTAGTTATAGGC
TGGTTGTTATGGAAGAACATTTTATTTCAGTCTAAAACTAATACTGTACT
TTCCCATACAGTCTTGATTTTAGTTTCAGATCTTATAAGACTTAACAGAA
ATACATTGGAAACTGTGAACATAACATACTTTTCTAGAGATAACTAGGCA
GAACTTAAAAAGGGAATTAAAATGATATGTCTCATTTCAAAAGAGAAGGA
CCTGGTTGTGGTTGACCAATCTATATTATGAAGAAAAAGCCTCGTTCAGG
TGCTAGGTTGATAGAGGGTAGTGTTAATAGATGAAGGTAAGGGACATAGT
GGTTGGGGTTTGGTGACAAATACCTTTACTACTTGAGCTGTCTTCTCAGC
TCAGACTATGCTTTTCACAGCATATTTTAACCTCTAAGAGTGACAAAAAT
GTTTAGAGTAATTTATTTATTATGN

CGATGCAGTGGGAGGCCTGGNGGCCGCCGGATTCGGAGCCGNAGGNGAAC
NANANAAGTTTCTGNGAGGAGCGNNNNNNACCAGAGACACNGAAACNAAN
AGAGGAGAAAGNAGGGACCCCCCNNGAAGANANGGGNACAGGGGAAAAAN
NCCGGAANAGAACAGCAAGGGCNGGGGCNGNAAGANCAAGACACGANAAA
GGGGACCCCACAAAACCGCAAAGCCNCGGCAAAGCAAAACACACCGCTTT
TTTTACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCA
AATCGGAAAGGTTATTTTTTTTTTACACACAGAAAGAACCCAAGAAGGCG
GACNCCAGAAAACCACCCCACCCCCAGCAAAAAAAGGGGCGCAGAGCGGA
ACAAAGAAGNCNCACCCGAGGAAAACCGAAGGGCAGAGAAACACCGGACA
AAAGGAACAAAAACCCCAACCACCAGGGAAACGCAAANCAAAACAACCCG
GAGACNCCACGGCACCCCAGACAGAACGGCNAAGAACAAAAACCCACGAG
ACAGCAGACGGCGGAGAGGAAGNGGAGAAAGGGGAACACNCCCCCAAAGA
CGGAGGGACCGCAAGCCAGCACAACAACACAGGAAAACAGCCAGGGCAGC
CCGCAGCAAACCGGCAACAGCACCACCGGAGGAACCAGAAAAACCCCACC
AGGGCAAAAAACCAGAAAA

Query= MSMg01no175_o01.b1 MSMg01no175_o01.b1 CHROMAT_FILE:
MSMg01no175_o01.b1 PHD_FILE: MSMg01no175_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:03 2005
         (678 letters)



>mm_chr2_48817645_48818721
          Length = 1077

 Score = 1218 bits (630), Expect = 0.0
 Identities = 663/674 (98%), Gaps = 1/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcatacccggaggcatccgctacgaggcaccacttattgggctgtaattcct 64
           ||||||||||| ||| ||||||||| ||||||||||||  ||||||||||||||||||||
Sbjct: 205 gaattcagtcaaaccaggaggcatctgctacgaggcactgcttattgggctgtaattcct 264

                                                                       
Query: 65  gtgagaaggagttccctcggtcatgatgaagaaacatttgctgaagagaagagcccaaga 124
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgagaaggagttcccttgatcatgatgaagaaacatttgctgaagagaagagcccaaga 324

                                                                       
Query: 125 gctgacacaggcatagataggagctaaagtccaagacatttgttgttagcaacattttcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgacacaggcatagataggagctaaagtccaagacatttgttgttagcaacattttcc 384

                                                                       
Query: 185 ttgatccttaagtttaatacttagacaaatattctttattattaatgagaaaaacataca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgatccttaagtttaatacttagacaaatattctttattattaatgagaaaaacataca 444

                                                                       
Query: 245 attagttataggctggttgttatggaagaacattttatttcagtctaaaactaatactgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attagttataggctggttgttatggaagaacattttatttcagtctaaaactaatactgt 504

                                                                       
Query: 305 actttcccatacagtcttgattttagtttcagatcttataagacttaacagaaatacatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actttcccatacagtcttgattttagtttcagatcttataagacttaacagaaatacatt 564

                                                                       
Query: 365 ggaaactgtgaacataacatacttttctagagataactaggcagaacttaaaaagggaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaaactgtgaacataacatacttttctagagataactaggcagaacttaaaaagggaat 624

                                                                       
Query: 425 taaaatgatatgtctcatttcaaaagagaaggacctggttgtggttgaccaatctatatt 484
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaataatatgtctcatttcaaaagagaaggacctggttgtggttgaccaatctatatt 684

                                                                       
Query: 485 atgaagaaaaagcctcgttcaggtgctaggttgatagagggtagtgttaatagatgaagg 544
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 atgaagaaaaagcctcgttcaggtgctaggttgatagaggatagtgttaatagatgaagg 744

                                                                       
Query: 545 taagggacatagtggttggggtttggtgacaaatacctttactacttgagctgtcttctc 604
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taagggacatagtg-ttggggtttggtgacaaatacctttactacttgagctgtcttctc 803

                                                                       
Query: 605 agctcagactatgcttttcacagcatattttaacctctaagagtgacaaaaatgtttaga 664
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agctcagactatgcttttcaaagcatattttaacctctaagagtgacaaaaatgtttaga 863

                         
Query: 665 gtaatttatttatt 678
           ||||||||||||||
Sbjct: 864 gtaatttatttatt 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space:   712756
Effective search space used:   712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)