Query= MSMg01no175_o16.b1 MSMg01no175_o16.b1 CHROMAT_FILE:
MSMg01no175_o16.b1 PHD_FILE: MSMg01no175_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:06 2005
(283 letters)
>mm_chr2_38435503_38436185
Length = 683
Score = 453 bits (234), Expect = e-132
Identities = 270/282 (95%)
Strand = Plus / Plus
Query: 1 gcccagaaagcctacccccttatccctgagaattgggccacacatactctcctggtcacc 60
||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||
Sbjct: 201 gcccagaaagcctacccccctacccctgagaactgggccacacatactctcctggtcacg 260
Query: 61 cttcactacaggctgtatttgggagaagctgggtgacagacaaaagagatccttttctta 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cttcactacaggctgtatttgggagaagatgggtgacagacaaaagagatccttttctta 320
Query: 121 agtcaggtttccttccttaggaaggaaaccttaggttgtttgagacacagacacatactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaggtttccttccttaggaaggaaaccttaggttgtttgagacacagacacatactt 380
Query: 181 aaacatatgaagagagccatgactctggtggtctggaggtagcagggatctgtcccccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacatatgaagagagccatgactctggtggtctggaggtagcagggatctgtcccccaa 440
Query: 241 tattatgttttttgctccaaccttcctggggctggctggcca 282
| | | ||||||||||||||||||||||||||||||||
Sbjct: 441 cagcaagccctttgctccaaccttcctggggctggctggcca 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no175_o16.g1 MSMg01no175_o16.g1 CHROMAT_FILE:
MSMg01no175_o16.g1 PHD_FILE: MSMg01no175_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:06 2005
(283 letters)
>mm_chr2_38603998_38604680
Length = 683
Score = 534 bits (276), Expect = e-156
Identities = 283/288 (98%), Gaps = 5/288 (1%)
Strand = Plus / Minus
Query: 1 actatgtagactggcctagaaggcacagagatctgcctgcc-----tctactgagaactg 55
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 546 actatgtagactggcctagaaggcacagagatctgcctgcctctagtctactgagaactg 487
Query: 56 gaacagataagttttcattttgttcataaacaacttttgagtgtgcttctaactgtctac 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaacagataagttttcattttgttcataaacaacttttgagtgtgcttctaactgtctac 427
Query: 116 atttccttctagctatcagagaagatggcatgcctggaggccggaacaagagcattggac 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atttccttctagctatcagagaagatggcatgcctggaggccggaacaagagcattggac 367
Query: 176 cagtccaggtgagtcctatacccactttcttagtgtggtttagaaacgtggtaatgtggc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cagtccaggtgagtcctatacccactttcttagtgtggtttagaaacgtggtaatgtggc 307
Query: 236 tccccaggccgtttaccttgatcttcttctctgccatctttgctttta 283
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tccccaggccgtttaccttgatcttcttctctgccatctttgctttta 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
