BAC Information

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BAC

Clone NameMSMg01-176A16
Chromosome2 (Build37)
Map Location 19,285,000 - 19,285,376
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc1, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3
Downstream geneMsrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609, Etl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176A16.T7 (MSMg01no176_a16.b1)MSMg01-176A16.TJ (MSMg01no176_a16.g1)
ACCAG370858AG370859
length1,2711,263
length of high quality
(start - end)
379 (88 - 466)668 (83 - 750)
definitionCHROMAT_FILE: MSMg01no176_a16.b1 PHD_FILE: MSMg01no176_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:18 2005CHROMAT_FILE: MSMg01no176_a16.g1 PHD_FILE: MSMg01no176_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTCTTNNNNGACACTGGCGCTAAGACTCCANAGGGAGAGGATCCGCG
GAATTAATCAGCAGTAACACGACCTGTATAAACCTTGTTGTGGTGAGCCA
TCTGGAAAGAGAAGCCTTAACGCCCCTCTAAAAATGCCTGAGCATATTTG
CCACTACACTTGTGTGGTTTCGGAGGGCACCCCAAGCTGCAGTGTCTGAA
CTACATATCTGTTAACAGGTGAAAATAAGATGCAACTAGAGGGGACTGTA
GGCCTCCCAGTGCACTGAAGTTCTCCTGGGCCGCAGGATGGTCCCAAACA
TCACCTGGAAAGTTCTTCTAAAGACAACCACTCAAGGGGACCTTGAGCTC
CACTGTAAACTTTAACATAAAGGTTGGCGAGACTGCACATAGGCAGAGGC
TGACACGTTTTTTATTGAGTTGGGATTCTGCTTGTAGATCTATTCTGGAG
CACTGGATTCCTTGTTGACTAAAGAAAAAAAATTAGAGCAGAGGCAAAGG
CAGGCAGATTCACACCCAAAGCCTGCCTGAGCTATAATGCTACATCCTAC
CCTCAGAGGGGGCAAAAGGGTAATTTAGATTAATTTCAGAAAGCAGATGG
TTCAGAAAGGTGAGGTTTTAATGAATGGCTTCACAGTTCAATGAAAGGAA
ACCAGATATTATGGGATAGAGATGATGTGACCCAGACAGGAGCCCAGGAG
ATCAATCGTTAAAGCCAGTCAAACCCTGGAAGACCCTGTTTTCTCTTTGA
TGGTAGATGTAACCTATAATTCTAATAGACCCCTTCCTCCCTAAGGTGTT
TGTGGTTCTGTTATTCCTTACTACATCTGATAGCTATTTATTACTTTACC
ATCTAATCTTTAAAGCAAGTCCTATTCTTTGTTTCATCTGCTTGACTGCT
TGTCTATATCTTTTTCTTCTTTTCTCTTATTCTTTTTCATTTCTCTTTTT
CTTTTCTTTTTTTCTCTATTTTTTTTTCTCTCTTTTTATATTTATTCCTC
TCTTTTCTTTTTCCTCTTTTCTTCTTTTTCTTTTCTCTTTTTCTTTTATT
TACTATTTCTCTTTCTCTTAATCTTCCTTATTTTTCTTTTTTCTTTCTAT
TATTTTATTTTTTTTTCTCTTATTATCTCTATTCTTTGTTTTTTTTTCTC
TTTCTTTCTCTCTTAATTATACTCTCTTTTTTATATCATACTTCTCTCTT
TCTGATTTCCTACTCTTTCATTTCTCTCATTATTTTCTCTTTATTTATTA
CTTTCTTTATCTTCTTTTATC
TTTTTTCAGATGCGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTCTTTACGGAGGAATACCGAATGGCAGAGAA
GCACCTGAACCCTTGCTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAG
TCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACTATTTCCTAAA
CACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTATGCCCCT
CCTTAGAAGTGGGAGCAAAACACCCTTGGAAGGAGTTACAGAGACAAAGT
TTGGAGTTGAGATAAAAGGATGGACCATGTAGACACCTACCATATCCGGG
GATTCATCCCATAATCAGCTTCCAAATGCTGAACCCATTGCATACCTTAG
CAAGATTATGGCTGAAAGGACCCTGATATAGCTGGCTCTTGTTCAAGTAT
GCCTGTGCCTACCAAACATAGAATTGTATGCTCCCATCCCGTCTATTGGA
TGTACTACTGGGCCCCCATGTAATGAATTTATAAAATTACCCATAAATTT
TAATGGTTTCTTTTCCCTTTTATGTGGTAACTCTTTTTGAAATTATTTCT
GTATCCCGGTACCTCTTTACTTTCTTTTTTTTTTAACTCATTAAAATTGC
TTATCTCGTCCTCTCCTTGTCGATAAATGTTCTTATTATTTACATTTCTT
TTATAGTTCTCTTTTATTCTGAATTTACATCCACTCCTTTTCTATTGTGC
TTACTTTATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_a16.b1 MSMg01no176_a16.b1 CHROMAT_FILE:
MSMg01no176_a16.b1 PHD_FILE: MSMg01no176_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:18 2005
         (379 letters)



>mm_chr2_19284800_19285578
          Length = 779

 Score =  658 bits (340), Expect = 0.0
 Identities = 368/384 (95%), Gaps = 14/384 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtggtgagccatctggaaagagaag--ccttaacgcccctctaaaaatgcctgagcat 58
           |||||||||||||||||||||||||||  ||  | |||||||||||||||||||||||||
Sbjct: 201 ttgtggtgagccatctggaaagagaagaccc--accgcccctctaaaaatgcctgagcat 258

                                                                       
Query: 59  atttgccactacacttgtgtggtttcggagggcaccccaagctgcagtgtctgaactaca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atttgccactacacttgtgtggtttcggagggcaccccaagctgcagtgtctgaactaca 318

                                                                       
Query: 119 tatctgttaacaggtgaaaataagatgcaactagaggggactgtaggcctcccagtgcac 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tatctgttaacaggtgaaaataagatgcaactagaggggactgtaggcctcccagtgcac 378

                                                                       
Query: 179 tgaagttctcctgggccgcaggatggtcccaaacatcacctggaaagttcttctaaagac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgaagttctcctgggccgcaggatggtcccaaacatcacctggaaagttcttctaaagac 438

                                                                       
Query: 239 aaccactcaaggggaccttgagctccactgtaaactttaacataaaggttggcgagactg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaccactcaaggggaccttgagctccactgtaaactttaacataaaggttggcgagactg 498

                                                                       
Query: 299 cacataggcagaggctgacacg-----ttttttattgagttgggattctgcttgtagatc 353
           ||||||||||||||||||||||     |     | |||||||||||||||||||||||||
Sbjct: 499 cacataggcagaggctgacacggacact-----actgagttgggattctgcttgtagatc 553

                                   
Query: 354 tattctggagcactggattccttg 377
           ||||||||||||||||||||||||
Sbjct: 554 tattctggagcactggattccttg 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)