BAC Information

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BAC

Clone NameMSMg01-176C12
Chromosome2 (Build37)
Map Location 59,571,166 - 59,571,688
singlet/doubletsinglet
Overlap geneTanc1
Upstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176C12.T7 (MSMg01no176_c12.b1)MSMg01-176C12.TJ (MSMg01no176_c12.g1)
ACCAG370934AG370935
length1,2661,240
length of high quality
(start - end)
692 (125 - 816)321 (89 - 409)
definitionCHROMAT_FILE: MSMg01no176_c12.b1 PHD_FILE: MSMg01no176_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:34 2005CHROMAT_FILE: MSMg01no176_c12.g1 PHD_FILE: MSMg01no176_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAAACTTNNNNNATCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTGAGCCACAAGCTGTTCCCATAAAAGCCCCCAAGTCCAACA
GTCTAAGAAGCCTCCATCCTTTCCGAGAGCCTCTCCAAGCATCAAAGACA
GCAAGCAGTTACAGATGCGACTGGACGCCAGCTGAATGTTTTTCTAAACA
TGAACTTGATCTGACTCAGCTGTGATAATGCCCCCAACACTGTACCCTGG
AAAGAAAGAAAATGGAAATGTCTAAGAAGCCTAGACAGATGGGGAGTTCA
AAAGAGGAGGGTGACAGAGAGACCCTTCCACCCTCTTTTAAGGTCTCAGC
AGTCCACAACTAGCCCAGACAGAGTGCCTACAAGCACCGTCCATTTAGAT
ATTTTCCAGAAGATGTTAACTTCAAAAAGAATACCCCTCAGTGAACTCTG
AAGGGAGCATCAAAATCAATACAACTTTCTGGAAAGCAACTGGCCAGTGT
GCAACAAGATTCTTCACAAATACAGTCCATTTCGTTGAGTAATTGCACTC
TGGGAAGCTGCCATCCTTGACTGAGGTATTTGATGTGCATAAAATTTACC
AGACAAAAGACTCAGGAGTTCTGGAGATAGGTTACACATCAACACTAATG
ACTTACTGATAAATGGTATGCTTATAGGCAGGGTCTTATGTAGCCCAGGC
TAGTCTTGAACCTCTGACCTTGCTATCTCTGCCTCATAAGTACTGGGCTT
ATGGGCATGCATGGATTCTTGGTGAGATGGGAAATGATACATATTGTGAT
ACATGTTACACTACAGTTTTTAAAAAAAATCACACCAGGAATTACAAACA
AATCAGGAAACATTTTAGGTCGTGCTACAAGGTTTGTTTTGTATGCGAAC
AAAACATGCCCTTCCATGCCCTGTAATTATATGCATGTCTCACAATACAT
GGCTATAGTTTCTTTAAATGAAAAACAATATAAATATTTAGTTGGAAGCT
AATTTTTAAATCCAATTATAAAATATTTAAACAGCTGAAAATAAACACCC
AATTTCTCCGGAAACCTATAAAACCCTATTAAGGTAAAGGGGGGAAAGGA
AAAATCGGTATAGAAATTTTTTTTGGCGGGGCTCTGTTATTACTTGCGCG
TAAAAAAACAACAGGTGGTTTTGTATCTACTCTTTAAGTTGCTGCCTCTT
TCCCCCTTCGCATCATCATTCTTATTCCACTGCCCCCTATTATCAACTCA
CACAACCATTTGTTTC
CGTTCTTTTNNAGAGCAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCCTAGACATTCGCTTCAAGAGCTGTA
GGAGACTTTGAACACCCTTTAAGAAACAGGCTATGAATGCCGGGCAGTGG
GGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTT
CTGAGTTTGGGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGG
GCTATACAGAGAAACCGAAAAGCCAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAAGGAAAAGAAAAGAAAGAGAAAAAAGAAAAAAGA
AAAGAAAAGATTTTGAAACAGGCTACAGTTTACTTCCTGGTGTCTGAAGA
TGCCCAAATATCTCCTGAGCCTCGTAGCACACTTAACCCCAGTGATGCAG
CAGCAGTTTTAACTAGTCCCTCCATATGGAGTAGGGTCATTTTCATTCAA
CAAAATAAAAAGTGATAGCAAAAAAATGAAATGTTTCTTTTGTTGAGTTT
TCTATATATGATTATATCAGTATAAAATAAGCCAGGTGGTGGTGGTAGTG
CACACCTTTAATCCAACCATTTGGAAGGCAGAGGCAGGTGGATCTCTGTA
AGTTCGAGGCCAGCCTGGTCCCAGAGTGAGTTCTAGGACAGCCAAGGCTA
CACAGAGAAACCTAGGCTGCTGATATGATTCCGTGGGTAAAGTCCTTGCA
ATGTACGCATGACAGCTTACAGCTTACGTTTCATCCCGGAATTCATGTAA
AGGTGGGTAGAGAGAGCAGACTCCCCAAAGTTGTCCTCTGAACTCTGACA
CCCCACAGTGCACTGGTACTCCCAAACTGTTTATTTGGTTAACCTCACTC
CCACCCACTCCTCTTCCCTTCTTTCTCTTCCATTTTTTTTAATTTTTTAA
AGGTCCCTTTGGCTTCGATAAACCTTCCCTGACCGGTTATTCGCTTTGTC
TGCCAGTTTGCGGATTTGAACTTTTTCCCCGGGACCACCGGTTAATAAAA
ACTCATCTCCCCCAAGGCGGCCCCTGGCCCCCCCATCTCCCAAAAACCCT
CTCGTTCTCTCTCTCTTATATAAAATAAACTATGGTATCTTCTCTTTTAT
TAAAGTCTCATCCACCTCCTCCTAATCCCTCTCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_c12.b1 MSMg01no176_c12.b1 CHROMAT_FILE:
MSMg01no176_c12.b1 PHD_FILE: MSMg01no176_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:34 2005
         (692 letters)



>mm_chr2_59571166_59572257
          Length = 1092

 Score =  973 bits (503), Expect = 0.0
 Identities = 518/523 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagagcctctccaagcatcaaagacagcaagcagttacagatgcgactggacgccagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gagagcctctccaagcatcaaagacagcaagcagttacagatgcgactggacgccagctg 464

                                                                       
Query: 61  aatgtttttctaaacatgaacttgatctgactcagctgtgataatgcccccaacactgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aatgtttttctaaacatgaacttgatctgactcagctgtgataatgcccccaacactgta 404

                                                                       
Query: 121 ccctggaaagaaagaaaatggaaatgtctaagaagcctagacagatggggagttcaaaag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 403 ccctggaaagaaagaaaatggaaatgtctaagaagcccagacagatggggagttcaaaag 344

                                                                       
Query: 181 aggagggtgacagagagacccttccaccctcttttaaggtctcagcagtccacaactagc 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aggagggtgacagaaagacccttccaccctcttttaaggtctcagcagtccacaactagc 284

                                                                       
Query: 241 ccagacagagtgcctacaagcaccgtccatttagatattttccagaagatgttaacttca 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 283 ccagacagagtgcctacaagcaccgtccatttagatactttccagaagatgttaacttca 224

                                                                       
Query: 301 aaaagaatacccctcagtgaactctgaagggagcatcaaaatcaatacaactttctggaa 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aaaagaacacccctcagtgaactctgaagggagcatcaaaatcaatacaactttctggaa 164

                                                                       
Query: 361 agcaactggccagtgtgcaacaagattcttcacaaatacagtccatttcgttgagtaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 agcaactggccagtgtgcaacaagattcttcacaaatacagtccatttcgttgagtaatt 104

                                                                       
Query: 421 gcactctgggaagctgccatccttgactgaggtatttgatgtgcataaaatttaccagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gcactctgggaagctgccatccttgactgaggtatttgatgtgcataaaatttaccagac 44

                                                      
Query: 481 aaaagactcaggagttctggagataggttacacatcaacacta 523
           |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 43  aaaagactaaggagttctggagataggttacacatcaacacta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)