BAC Information

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BAC

Clone NameMSMg01-176D08
Chromosome2 (Build37)
Map Location 82,162,504 - 82,162,849
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040704, Zfp804a
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176D08.T7 (MSMg01no176_d08.b1)MSMg01-176D08.TJ (MSMg01no176_d08.g1)
ACCAG370971AG370972
length1,2621,259
length of high quality
(start - end)
425 (29 - 453)661 (125 - 785)
definitionCHROMAT_FILE: MSMg01no176_d08.b1 PHD_FILE: MSMg01no176_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:41 2005CHROMAT_FILE: MSMg01no176_d08.g1 PHD_FILE: MSMg01no176_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGTGCTTTCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTACTGCAATGCCTAAACTCTACTGAACTACATTCATTAAACTGCCCTCC
ACTCCTGACTCTCTTGGCACTGCACTTAAGTAGACTCACTTTCCTGTCTC
TTCTCTGAGAGTTGGGCTTTTCCTGTCTCTGATTTGTTCTGTGAGATCTT
TCTCTGATTTATCCCTTTGCCCATCAGATGTCACTTTCAAATATGGCTGC
TTCCTTCTACAAAATAAATTTACTTTCACTGTTTAGGATTAAAAATATGT
ACTAAGGGTGTGTCTGAAACCAGTAACAGGGATTAAATGTGTGACACCCC
ATCCAAGAGAAGCCATGTTGCTACATTAAAAGTCCTCTACAACTATTTAT
TTTGAAACAACAAAATAATTGTAATAATAAAAATACATGGAAACCTTGAA
TTTTTTTTTTCCCCCCCCCCCTGTGTATGCAAACATTTTGAAGAAATTGT
TTTAAGTAAATTATTATGAATAAAGGAAAATTTGAGCCTATTATAACTGT
TCTACAGTAATAGCATATAGAGATTAATTACCAAAAGAAATAACAAAAAC
ATATTTATTAAAATTCAATAAAAACTCACATTGTCAAAACACTATCATTT
TAGTTTGTATGAAAAATAATAATACTTAGCAAATTAATACAAGGTTGACA
TTTCAAACATGATCCTTAGATATGATTATAATATTAAAATGAAAAAATAA
ATAAGTGGAATAATAATAACCTGAATAATAATAAACTGAATAATTCCTAT
GCTTGTGATCAAATTTTAAGCAGTATACTTTTGGATGAATATGAAGAAAA
CTATGAAGTTTTCTGTGAATTTAATAACATCACCTTTTATATTTTGAGGG
CTAAAATATGTATACAATTATTTACAGAGTTAAAAGCCAAAGAAGTTTTA
CACATCAAACATAAACCAGCAGATTGCTTTGTTGTATATTAAATGTTTAT
TTGAATTGCCTGAATAAAAAATTTGTTATTCATGCTTCCCATAGGTTGGG
GGATTTTTATCCAAGAAAATTGGCGGTTCCTTTCCCTGTAATCCACAAAT
TACATGTGGTTCCGTATCTTTTCCCCTCACAAATTTTTTAAAGTCCCAAA
AATTTTCAAGGGGTACTTTTTCCAACCGGGGGGGTTTGACTCTTTGCCTT
TGTGCCAAAATACTCCTCTCTGGTTATCCAAACACTTCTCTTATGAAAAA
TTATTCTTTCCC
CCCCNTTATCAAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTATAAGTCCCCTAGGACTTACCACAACAC
TTTATTTCACCCTTCAAAATACTTGACACTATTGGTATGACAGATTCTGG
ATGGCAAGAAATCAAGAAAACACAAACAAGATGGAAAAACAAACTTCAGG
ACATTGAAGCAGAAAAGGTTAAAAAAAAAGAATATGGACTTTCTTATGTA
TCCTGCAGCATTAAGAATTTCACTGTCTGTTCCACACTTTGTCTCTGGAT
CTTCTCCCATGGGTACTTTGATCCCTCTTCTAAGAAGGACCAAAGAATCC
ACACTGTGGTCTTCCTTCTTAAACCTCATATAGTCCGGGAATTGTAGGCT
GGTTATTCAGAACTTCTGGGCTAATATCCGCTTATCAGTGAGTGCATACC
ATGTGTGCTCTTTTGTGATTGGGTTACCTCACTCAGGTTGATAGTCTTTA
GGTTCATCCATTTGCCTAAGTTTTCTTTACTTTTTTTGTTTGTTTGTTTG
TTTGTTTTTTAATATTTTATTTTATTTTAATTAGGTATTTTCTTCATTTA
CATTTCCAAAGCTATCCCAAAAGCCCCCCATACCCTCCCCCATTCCCCTA
CCCACGCACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATA
TAAAGTTTGCAAGACCAATGAGCCTCTCTTTCCACTGATGGCCAACTAGG
CTATCTTCTGCTACATATGCAGCTAGAGACATGAGCTCCGGGGCTACTGG
TTAGNTTATATTGTTGTTCCCCCTAAAGGGTTGCAAACCCCTTTAACTCC
TTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCCGTGATCCATCCAAT
AGCTGACTGTGAGCATCCCCTTCTGTGTTTGCTAGGGCCCAGCACAGCCT
CGCCAGAGACAGCTATATCAGGGTCCTTTCCACAAAATTTTGCTAGCGTG
TGCAATGAAAGGGGTCCTCTTTTTGGAGGCTGATTTGGGAATGGATTCCC
CGTTATTAAAGCCCCCAAAAAGGTCCATCCTTTTCGCCCCGCTTCAAATC
TTTTCCCTGAAAACCCCTTCCCGGGGGCGTCGGTCCCCCATTCCTCTTTT
TTTTTAAATTTCAAATTCTTTTAAATACGATATTCTCCCCCAAAAAATCT
TTATTGGTACTCTCAAAAAATCCCCTATCCTCTCCCCTATTTTTCTTATC
CCTCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_d08.g1 MSMg01no176_d08.g1 CHROMAT_FILE:
MSMg01no176_d08.g1 PHD_FILE: MSMg01no176_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:41 2005
         (661 letters)



>mm_chr2_82162504_82163566
          Length = 1063

 Score =  650 bits (336), Expect = 0.0
 Identities = 343/346 (99%), Gaps = 2/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacactattggtatgacagattctggatggcaagaaatcaagaaaacacaaacaagatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gacactattggtatgacagattctggatggcaagaaatcaagaaaacacaaacaagatgg 287

                                                                       
Query: 61  aaaaacaaacttcaggacattgaagcagaaaaggtt--aaaaaaaaagaatatggacttt 118
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 286 aaaaacaaacttcaggacattgaagcagaaaaggttaaaaaaaaaaagaatatggacttt 227

                                                                       
Query: 119 cttatgtatcctgcagcattaagaatttcactgtctgttccacactttgtctctggatct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cttatgtatcctgcagcattaagaatttcactgtctgttccacactttgtctctggatct 167

                                                                       
Query: 179 tctcccatgggtactttgatccctcttctaagaaggaccaaagaatccacactgtggtct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tctcccatgggtactttgatccctcttctaagaaggaccaaagaatccacactgtggtct 107

                                                                       
Query: 239 tccttcttaaacctcatatagtccgggaattgtaggctggttattcagaacttctgggct 298
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 106 tccttcttaaacctcatatagtccgggaattgtaggctgggtattcagaacttctgggct 47

                                                         
Query: 299 aatatccgcttatcagtgagtgcataccatgtgtgctcttttgtga 344
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  aatatccgcttatcagtgagtgcataccatgtgtgctcttttgtga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1063
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1053
Effective search space:   685503
Effective search space used:   685503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)