Query= MSMg01no176_k01.b1 MSMg01no176_k01.b1 CHROMAT_FILE:
MSMg01no176_k01.b1 PHD_FILE: MSMg01no176_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:37 2005
(522 letters)
>mm_chr2_19208485_19209407
Length = 923
Score = 882 bits (456), Expect = 0.0
Identities = 490/502 (97%), Gaps = 3/502 (0%)
Strand = Plus / Minus
Query: 1 aggcacatctgcaatcccatctctcagaggatgaagaaagggggaatggtgagtcccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aggcacatctgcaatcccatctctcagaggatgaagaaagggggaatggtgagtcccagg 443
Query: 61 ctagaggccagagaccagcctgggttctgcagtgagaacctatagaaaataatatataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctagaggccagagaccagcctgggttctgcagtgagaacctatagaaaataatatataaa 383
Query: 121 caaacattatgtactaggtatgtagtactagcaagaacaaagggcagaaaattctgttcc 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cgaacattatgtactaggtatgtagtactagcaagaacaaagggcagaaaattctgttcc 323
Query: 181 tttcccaaaaacttgaaggcacttataattttt-ccttcctgaaccataagatgtggagt 239
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 322 tttcccaaaaacttgaaggcatttataattttttccttcctgaaccataagatgtggagt 263
Query: 240 aggaagacagggcgagacttggtgagtaacgggagcatatttagggctccagctaggctg 299
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 262 aggaagacagggcgagacttggtgagtaacgggagcagagagagggctccagctaggctg 203
Query: 300 gatgtgggaagccacatgtgccgttgcagggtggcactggctaccgctggccaccacaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gatgtgggaagccacatgtgccgttgcagggtggcactggctaccgctggccaccacaca 143
Query: 360 tacataggcagtaaagcttttttttttttttttttttt--gccaagatgaggttttgaga 417
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 142 tacataggcagtaaagctttttttttttttttttttttttgccaagatgaggttttgaga 83
Query: 418 attaacccatcagatgagagacatgctaatcaatcagatgagagacaagttaacccatca 477
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 82 attaaccaatcagatgagagacatgttaatcaatcagatgagagacaagttaaccaatca 23
Query: 478 gatgagagacaagttaaccaat 499
||||||||||||||||||||||
Sbjct: 22 gatgagagacaagttaaccaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_k01.g1 MSMg01no176_k01.g1 CHROMAT_FILE:
MSMg01no176_k01.g1 PHD_FILE: MSMg01no176_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:37 2005
(609 letters)
>mm_chr2_19091902_19092910
Length = 1009
Score = 1015 bits (525), Expect = 0.0
Identities = 582/609 (95%), Gaps = 13/609 (2%)
Strand = Plus / Plus
Query: 1 ctcttggtctttgtgcttgtgtaggtattttcacaatgatgaaaatattagagaagcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttggtctttgtgcttgtgtaggtattttcacaatgatgaaaatattagagaagcaac 260
Query: 61 ttaaaggagaaaatattcttttatctgtgaattttagaggtttcagtacaagattggcag 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaggagaaaatattcttttatctgtggattttagaggtttcagtacaagattggcag 320
Query: 121 gatccattgccttcagttgaagtgaaacaggccaccatagcaacaggatatatgtggtag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatccattgccttcagttgaagtgaaacaggccaccatagcaacaggatatatgtggtag 380
Query: 181 aagagaaggctcatcatcccatggaggtagcaaaccagaaaaacagagacaaaaaggaac 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagaaggctcatcatctcatggaggtagcaaaccagaaaaacagagacaaaa------ 434
Query: 241 tggggacaggaactggggacaaggtctatcttttcaggattttcccccagtgacacattt 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 435 -------aggaactggggacaaggtctatcttttcaggaccctcccccagtgacacattt 487
Query: 301 actctcattaagatcctactttccacttcctttacatagcaccaccagcttgagaccaag 360
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 488 gctctcattaaaatcctactttccacttcctttacatggcaccaccagcttgagaccaag 547
Query: 361 ccttcactcatgggcctgttggatacttccatatccaaagtccaacagccttgctgaaca 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 548 ccttcactcatgggcctgttggatacttccatatccaaagcccaacagccttgctgaaca 607
Query: 421 catggagaaccagagcctatttgtattctcccagagccatgctaaggtaggggagaactc 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 608 catggagaaccagagcctatttgcattctcccagagccatgctaaggtaggggagaactc 667
Query: 481 atcaccatccgctaaggatctgtgtttgcagattttgcaaaatctggaaggacagagagc 540
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atcaccaccccctaaggatctgtgtttgcagattttgcaaaatctggaaggacagagagc 727
Query: 541 tcagactctatcatgttgaagaataagcatggttcccccaagtgactttggtgaggaggt 600
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 728 tcagactctctcatgttgaagaataagcatggttcccccaagtgaatttggtgaggaggt 787
Query: 601 aatgacagc 609
|||||||||
Sbjct: 788 aatgacagc 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
