BAC Information

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BAC

Clone NameMSMg01-177A15
Chromosome2 (Build37)
Map Location 173,032,930 - 173,033,171
singlet/doubletsinglet
Overlap geneZbp1
Upstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1
Downstream geneTmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177A15.T7 (MSMg01no177_a15.b1)MSMg01-177A15.TJ (MSMg01no177_a15.g1)
ACCAG371553AG371554
length714799
length of high quality
(start - end)
242 (70 - 311)128 (81 - 208)
definitionCHROMAT_FILE: MSMg01no177_a15.b1 PHD_FILE: MSMg01no177_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:31 2005CHROMAT_FILE: MSMg01no177_a15.g1 PHD_FILE: MSMg01no177_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXCTCCAGAAAGAGGATCCG
CGGAATTCATTTTCACCCTTGGTGACAGAGTGAATCAAAGCCAGTTTGGA
CCACATGAGACCCTGATGCCTTTAGTGACTCATTTTCTTTGGCTTCCCAA
AGTCTCTACCCTGACCGGATGGATATCCTTGTCAGACAGTGAATCCGTCG
AGAGACTGGTGTGTGGATGATCTTGGAGTCATACAGGACCAAGTTGCTGA
TCCTTGGCCTTTCCAGGGACAATACCACACTTGAATCACAACAGAAATCT
AGTGCAGGCCCTGTTTACAGTCACAAAAAAGTCCCAAAGGCCTCTCCACC
TCTGCCTGTGCCCTCGCCACCTCTTTCCTCACCTCAGTCCTGTGTCTTGA
GAGCTTTCCCCCCCCTTTACTTCATGCTCTCTAAGCACAGGTTCTGTGGT
CTGGGGTCTACTGTCTCCCAGAGCCATAGCTCTCAGCTCATAGGTGGGCA
GCATGGAGTCACTGGCTGTGCGCTGTCTCCTTCTGTTTGGAGTGTCTTCT
CAGTTTGTACCTGTCCCCCATCTACAACAGTCTAGTTTCCTGTTTATTCT
CTCTAACTATATTATTTTAATTTTTTTCGTTCCCACATATATCAATTTTT
ATTTTCCCCGTACTCCCACACTTATTCTCCCTTCCTCCCCCCCCTCCTCC
CTTTTTCCTCTCCA
NNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACGTCTGCCAGCTTTTGT
TGTGCAAATCTTGTTCCTTAATTGAAAACTAATGGTTAGATAAAAATGGT
TACAGCCAGTTACTGAAGGGATTTGAGGTTGGGGGGAGGGGTACGAGTTA
CCTGTTTGTTTTTGTTTATTTTCTNTCTTTTTTTTTCTTTTTTCTTCCTT
TTNCTTTTTCCCTTCTCTCTTCCTTTTTCCTCCCCCCTTTTCTCNCCCTC
CTCCCTCCCCCCCCCCCTTTTTTTTTTTTTTCCCTTTTCCCCTCCCCTCC
TTTCCTTCTCCTTTTTCCCCCCCCTCCCCCTTTTTTTTTTATTCCTCTTA
TTTTTTTCTTATTTCCTTTACCCCCCCCCTTTTTTTTTTTTTTTTTTCTC
CCCTTCGTCCGGGTCTTCTCTCTCCTTTGCCGCCGAGCTCCCCCTCATTT
CCCCTCCTCCTCTCCCTCCATTTTCTCTTCCCCTTTCCGTCATTCTTTTC
CTCTATTTTTCTACCCTATCTTTCTCGCCCTATTTTTTTTTCCCCCCCCC
CCCCCCTTTTTTTCCTTTCTCCTATCTATATCGCCCTCCTTTTTTGCCGT
TTCTCCTTTTTTTTTTTTCATAACTCTATATTTTCCCTCTTTCTTTTTTC
TCCTCTCTCTTTCGCCTCCTTGTATACTCTCTTCTTATTCCTATTTCTAA
CGCAACATATTATATTCTTCCAACCAGCACCTCCCTTCATCTTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_a15.b1 MSMg01no177_a15.b1 CHROMAT_FILE:
MSMg01no177_a15.b1 PHD_FILE: MSMg01no177_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:31 2005
         (242 letters)



>mm_chr2_173032730_173033371
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgacagagtgaatcaaagccagtttggaccacatgagaccctgatgcctttagtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tggtgacagagtgaatcaaagccagtttggaccacatgagaccctgatgtctttagtgac 260

                                                                       
Query: 61  tcattttctttggcttcccaaagtctctaccctgaccggatggatatccttgtcagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattttctttggcttcccaaagtctctaccctgaccggatggatatccttgtcagacag 320

                                                                       
Query: 121 tgaatccgtcgagagactggtgtgtggatgatcttggagtcatacaggaccaagttgctg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatccatcgagagactggtgtgtggatgatcttggagtcatacaggaccaagttgctg 380

                                                                       
Query: 181 atccttggcctttccagggacaataccacacttgaatcacaacagaaatctagtgcaggc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 atccttggcctttccagggacaataccacacttgaatcacaacagaaatctagtacaggc 440

             
Query: 241 cc 242
           ||
Sbjct: 441 cc 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)