BAC Information

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BAC

Clone NameMSMg01-177D03
Chromosome2 (Build37)
Map Location 139,613,258 - 139,613,745
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
Downstream geneTasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177D03.T7 (MSMg01no177_d03.b1)MSMg01-177D03.TJ (MSMg01no177_d03.g1)
ACCAG371654AG371655
length720726
length of high quality
(start - end)
652 (69 - 720)491 (77 - 567)
definitionCHROMAT_FILE: MSMg01no177_d03.b1 PHD_FILE: MSMg01no177_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:43 2005CHROMAT_FILE: MSMg01no177_d03.g1 PHD_FILE: MSMg01no177_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGCGATACCGAATGGCAGAGAAGCACCTGAAAAAATGC
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAG
AAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGAAGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCT
AAGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGA
AAAATGAAGACTGAAGTGTG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTATAACACGACGGAGGTGC
TGAAGACCTGTCAGAGCCATGCTCAAAGCTTAACTGAAATGCTCACGTTT
CCTTCCCTCCTGGCCTTTGGTTACTGAAAACATTTGCTAAAAATTGCTGT
CCCACTCAAGAACTGTCAAAGGTAATTGTGTTGCACAGAAGTTACCAAGA
AGCATGCAATAATATGGTTACCACCTGGCGACCAAGTTCATAGAACCTGT
CTGAAGCGCCGCTAGGCCCTGCCACATGTGAGCACACCAGTTTCTGTCTG
AAAGGCAGGACAGCATAAATTGGTGAGGAAGATGTGAATCAGGGGCCTCT
TAGTGGGAATTTATGATACAAATCCCCATGTAAGGGCACCTCTCAGGTCA
CCAAATCCAGTGAGGTCTATGGTTCTGCAAATGGCAGCCTGAGGAAGATG
GAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGATATCTTTTTTTTCTTTTCTTTCTCTTTTTTTTTATC
CCGCGCTCTTGTTCTTCGCTTTCCTTCTTCCCTCCCTTTTATCATCCTCT
TCCTTAACATCCGCTTTTCATCCATACATTCACATACACCATTTAATCTA
TAACAATAACCCCATTAACACTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_d03.g1 MSMg01no177_d03.g1 CHROMAT_FILE:
MSMg01no177_d03.g1 PHD_FILE: MSMg01no177_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:43 2005
         (491 letters)



>mm_chr2_139613122_139614012
          Length = 891

 Score =  905 bits (468), Expect = 0.0
 Identities = 483/488 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatttataacacgacggaggtgctgaagacctgtcagagccatgctcaaagcttaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctatttataacacgacggaggtgctgaagacctgtcagagccatgctcaaagcttaactg 565

                                                                       
Query: 61  aaatgctcacgtttccttccctcctggcctttggttactgaaaacatttgctaaaaattg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaacgctcacgtttccttccctcctggcctttggttactgaaaacatttgctaaaaattg 505

                                                                       
Query: 121 ctgtcccactcaagaactgtcaaaggtaattgtgttgcacagaagttaccaagaagcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgtcccactcaagaactgtcaaaggtaattgtgttgcacagaagttaccaagaagcatg 445

                                                                       
Query: 181 caataatatggttaccacctggcgaccaagttcatagaacctgtctgaagcgccgctagg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 caataatatggttaccacctggcgaccaagttcatagaacctgtctgaagcgccgccagg 385

                                                                       
Query: 241 ccctgccacatgtgagcacaccagtttctgtctgaaaggcaggacagcataaattggtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccctgccacatgtgagcacaccagtttctgtctgaaaggcaggacagcataaattggtga 325

                                                                       
Query: 301 ggaagatgtgaatcaggggcctcttagtgggaatttatgatacaaatccccatgtaaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 ggaagatgtgaatcaggggcctcttagtgggaatttatgatacaaattcccatgtaaggg 265

                                                                       
Query: 361 cacctctcaggtcaccaaatccagtgaggtctatggttctgcaaatggcagcctgaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacctctcaggtcaccaaatccagtgaggtctatggttctgcaaatggcagcctgaggaa 205

                                                                       
Query: 421 gatggaggaagaaagagagagagagagagagagagagagagagagagagagagagagaga 480
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gatggaggaagaaagaaagaaagagagagagagagagagagagagagagagagagagaga 145

                   
Query: 481 gagagaga 488
           ||||||||
Sbjct: 144 gagagaga 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)