BAC Information

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BAC

Clone NameMSMg01-177H17
Chromosome2 (Build37)
Map Location 86,498,584 - 86,499,035
singlet/doubletsinglet
Overlap geneOlfr1085
Upstream geneOlfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084
Downstream geneOlfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177H17.T7 (MSMg01no177_h17.b1)MSMg01-177H17.TJ (MSMg01no177_h17.g1)
ACCAG371859AG371860
length729715
length of high quality
(start - end)		321 (59 - 379)444 (58 - 501)
definitionCHROMAT_FILE: MSMg01no177_h17.b1 PHD_FILE: MSMg01no177_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:04 2005CHROMAT_FILE: MSMg01no177_h17.g1 PHD_FILE: MSMg01no177_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGATG
GATGCCAGTTCAGCTCCAAGCAACTCAATCTCTCAATGAGTAAAATCCAA
GACAAACTACAAGGCAAAGCTTTACTGAGCAGAGGTAGCAGGAAATGCAA
TGGTGGCAGGCAATGAGGAAAACAACCTGGAATGCTGAGAAGAAACAGTG
AGCCATATGACCTTCCAGTGGTCCTTCACAATTCACCAAGAGCAGAAAAG
GGACATAAACACATGGATTTTATACAGCAATGTCCTCCTTACCTCCATAT
ACCATAACTCTTACATTTGCCCTAAAGATTTCAATGAGAATCAATTTTTT
TGTCTCGAGTTATTAAAAATCTGACCCTNACTCCTAAATAATCAAACAAA
TTGAAGGACCCGCCCTTTCCACGCCTTTGAAGAATTGGGTTGGAATTCTG
AGGCGAATTGCCCTGATTCTGAAACTGGCCTTTGGAAGGAGGACCATATT
TACCAGGTCAATAATACCAATTCACAAAATTGGGGAATCTCCCCTTTTCC
GGAGGCCTCCTCCAATTTTTTTTTTCCAAGACTTGAATTCCATGTTGACC
AGAACCTCCACTCGCTGGCTAAAAGAAAACTCCCGGATATTATTTTCGAT
TAAACGCCATCAAGCGAAGTCCCGACAATAAATCGCGCAAAATTTTCCAC
CTTCTCTTTTCTCCACTTTCCTACCATTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTCAGCACTGTGAGATTCTGTTTCTCCATGCAGGTATAGTTC
AGATTCTGTCCAGGATAGAAAAAATTATGATGTCAAAAAAAAAACAACAA
CAACAAAAAACAAAAACAAAAACTTGAGACATTGTCTTCTTCAGAACATT
TGCTAAATAAATCTCTTGTAAATGTGATATATTAAATATTTCATATAGAA
CATTTGAAAATGAATATACATCTGATTCATATACAATGAATTATGAATGA
TACAGAGGCAGTAACAGGGATTTGTTTCTCATATATGGTATTTTTTAAAT
TAAAAACCATTCAGTGTCTCAAGTTAATACATTCATATATAGTTTGAGGT
GAAAAGTTATTGGCAGTGAATGGTTTAAAGACTACCTAAGCTTAAACACT
TTTCAGTTCATCCAAATTCCAGTCATAAGGAATATATATGCTTCTTTAAG
AATTTAACGAATTAATTATACCGGAAAAAACATAATGGTTTAATAAATCT
TAATCTGCCAAAAGTAGAGGTTTCCCCTGTCCAGCATAATTCTGATGCCT
GAATGCCTGTATAAAACAGGAAATTCTGTTAATGCCACTGGATATTTCAT
ACCTAATTGCCATTCAGACCAAACATTTATTAAAAAACACTCCCAACTGG
GAATTAGAAATGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_h17.g1 MSMg01no177_h17.g1 CHROMAT_FILE:
MSMg01no177_h17.g1 PHD_FILE: MSMg01no177_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:04 2005
         (444 letters)



>mm_chr2_86498389_86499235
          Length = 847

 Score =  787 bits (407), Expect = 0.0
 Identities = 439/453 (96%), Gaps = 10/453 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcagcactgtgagattctgtttctccatgcaggtatagttcagattctgtccaggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 196 actcagcactgtgagattctgtttctccatgcaggtatagttcagattctgtccagggta 255

                                                                       
Query: 61  gaaaaaattatgatgtcaaaaaaa-aa--acaacaacaacaaaaaa--caaaaacaaaaa 115
           |||||||||||||||||||||||| ||  |||||||||||||||||  ||||||||||||
Sbjct: 256 gaaaaaattatgatgtcaaaaaaacaacaacaacaacaacaaaaaaaacaaaaacaaaaa 315

                                                                       
Query: 116 cttgagacattgtcttcttcagaacatttgctaaataaatctcttgtaaatgt----gat 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 316 cttgagacattgtcttcttcagaacatttgctaaataaatctcttgtaaatgtatgtgat 375

                                                                       
Query: 172 atattaaatatttcatatagaacatttgaaaatgaatatacatctgattcatatacaatg 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atattaaatatttcatatagaacatttgaaaatgaatatacatctgattcatatacaatg 435

                                                                       
Query: 232 aattatgaatgatacagaggcagtaacagggatttgtttctcatatatggtattttttaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 436 aattatgaatgatacagaggcagtaacagggatttgtttctcatataaggtattttt-aa 494

                                                                       
Query: 292 attaaaaaccattcagtgtctcaagttaatacattcatatatagtttgaggtgaaaagtt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 attaaaaaccattcagtgtctcaagttaatacattcatatatagtttgaggtgaaaagtt 554

                                                                       
Query: 352 attggcagtgaatggtttaaagactacctaagcttaaacacttttcagttcatccaaatt 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 attggcagtgaatggtttaaagactacctaagcttaaacacttttcagttcatccaaatt 614

                                            
Query: 412 ccagtcataaggaatatatatgcttctttaaga 444
            |||||||||| |||||||||||||||||||||
Sbjct: 615 tcagtcataagcaatatatatgcttctttaaga 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 847
Length adjustment: 10
Effective length of query: 434
Effective length of database: 837
Effective search space:   363258
Effective search space used:   363258
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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