BAC Information

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BAC

Clone NameMSMg01-177L14
Chromosome2 (Build37)
Map Location 8,967,218 - 8,967,504
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672230
Downstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177L14.T7 (MSMg01no177_l14.b1)MSMg01-177L14.TJ (MSMg01no177_l14.g1)
ACCAG372025AG372026
length751745
length of high quality
(start - end)
318 (39 - 356)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no177_l14.b1 PHD_FILE: MSMg01no177_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:21 2005CHROMAT_FILE: MSMg01no177_l14.g1 PHD_FILE: MSMg01no177_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GCGAAGGTCAAGTGGACACCTCTAGTTCGTTTGGAAAGTTAGTTCTGCCT
ATAATGTTTGGCTGGCCCACACAGCTGAAAGGATGTTCTTCAAAAAGCAA
GCACATGAAAGACTGCTTTCCTGAAAGATGAAAGGATGTCTTGCTAAATC
AAACAGTGGAAGGACTCTTGATGAAGGAGTTCAAATATGACCCTGCAGAT
AGTAGGAGGCAAGCACTGAGTTTTGGTTTGGTTTGCTCCTCCTTGTTCTT
CTTCGATAAAGACACATATGTATTGGTTCACCTTACATAGTGTTGTTGAG
CTCATTTTTTTATCATCCCCCCCCCGACAGAAACACACCCACGAACTGCT
TGTGAGTCCCCCCGCGGCAACTTGAACAATCCTGGGGCCTCACCTTAGGC
CAGATGACAAGCTTGGTGCTTTCTTCAAAATTGAACTACAGTTGCCTCGT
ATCCGATTGCTGATAGGATAGGACCGTAACTGCTGTTTCATGCCTGATGA
CTGCCTCCGAAGATTATTGTTATGAATCTGCTAAGTAGTGCTTGCTGTTT
CGCCACGCTATTGACTTCGTACCCTTTTATAAGCGAATTCTTTCCCAAAC
CAATTATTTGCCTACCATGTCCACAAATTCCTCCATAACCTTACCAACAC
CCCTTATTTTCATCTATCCTTCTGTTTTTACCGCCTTTCTTCTTGTAATA
G
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGAGAGAAAATGATGTGTACAAC
CCTGTGAGAGCTCTGGAGGCTTTATTCGTATTGAGAAAGGTGTTTCTAGT
GGATTTTCCCTTGTGCCTTTGAACTTTACAGATATGAGCCAGATGTCCTC
CATGCACCCTAGTGGCCTGATACAAATACTTAGAGACCATGTCTTCTTTA
GCCTTAATATGAAAATTTTCAAATGTTTTCTAATGAAAATATAAGCTTCT
TAATTCTCTCTTCTCTATTTGAAGTACCTAATCCTCACTTCAAGCCTAGC
TAAAAATTTCTACCTTTATTCTTGTCACCCCCCCCGCCCGGATGTGCCAT
CTCAAAGTTCTACCAAGCTTACCCAATACATCACTAAAATATAGCTTCAT
ACAAAGTCTGAATAGATAAAAAAAAATATGGACAAGATCTTTGCCAGAAT
ATAATGATTGGCTATGAGTCCAATTTTCAAAATAGGTCTTTGCTCCTATG
TAAAAACCTACAGGCACAGTCTTTATTGCTCATGTTCTATTGGCATTCTG
GGCTTCTGTCAGAATAACCTGCTTGCCAACAATGAAGTTCTCCTCTCAAC
GTTTTTCTTCCTTTTTTTTCTTACAAAGACTTACACTTGAGCTTAGCTCA
GTAGTACAGTTTCTTGTCTAGCTTGTACAAGACCCTTGTATTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_l14.g1 MSMg01no177_l14.g1 CHROMAT_FILE:
MSMg01no177_l14.g1 PHD_FILE: MSMg01no177_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:21 2005
         (291 letters)



>mm_chr2_8967018_8967707
          Length = 690

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%), Gaps = 1/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagagaaaatgatgtgtacaaccctgtgagagctctggaggctttattcgtattgaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tggagagaaaatgatgtgtacaaccctgtgagagctctggaggctttatt-gtattgaga 259

                                                                       
Query: 61  aaggtgtttctagtggattttcccttgtgcctttgaactttacagatatgagccagatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaggtgtttctagtggattttcccttgtgcctttgaactttacagatatgagccagatgt 319

                                                                       
Query: 121 cctccatgcaccctagtggcctgatacaaatacttagagaccatgtcttctttagcctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctccatgcaccctagtggcctgatacaaatacttagagaccatgtcttctttagcctta 379

                                                                       
Query: 181 atatgaaaattttcaaatgttttctaatgaaaatataagcttcttaattctctcttctct 240
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acatgaaatttttcaaatgttttctaatgaaaatataagcttcttaattctctcttctct 439

                                                           
Query: 241 atttgaagtacctaatcctcacttcaagcctagctaaaaatttctacc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttgaagtacctaatcctcacttcaagcctagctaaaaatttctacc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)