Query= MSMg01no177_m05.b1 MSMg01no177_m05.b1 CHROMAT_FILE:
MSMg01no177_m05.b1 PHD_FILE: MSMg01no177_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:23 2005
(569 letters)
>mm_chr2_169022786_169023754
Length = 969
Score = 951 bits (492), Expect = 0.0
Identities = 559/610 (91%), Gaps = 46/610 (7%)
Strand = Plus / Plus
Query: 4 ggaattcttaaagtccccacattaaatgtattttttctacagacaaaattccagggtgga 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcttaaagtgcccacattaaatgtattttttctacagacaaaattccagggtgga 264
Query: 64 gctactgacaactgatggctgccgggaaagggagcctcaagtgcagcctgtggtggggtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctactgacaactgatggctgccgggaaagggagcctcaagtgcagcctgtggtggggtg 324
Query: 124 accttgttccagaaaaggccacatgtccaggaatacatgagcagcacaaagtgaacctca 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 accttgttccagaaaaggccacatgtccaggaatgcatgagcagcacaaagtgaacctca 384
Query: 184 tggataattttcatggatacattttttttaagggacacaattgttgggtgtctagggttg 243
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tg-ataattttcatggatacattttttttaaaggacacaattgttgggtgtctagggttg 443
Query: 244 ggtgagccgccattcccattttagtttggcctcttcccttatacagactccagttttgct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtgagccgccattcccattttagtttggcctcttcccttatacagactccagttttgct 503
Query: 304 agttgaaaactgtttcttttattatttgagattataatataactacatcattttcccctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agttgaaaactgtttcttttattatttgagattataatataactacatcattttcccctt 563
Query: 364 cccatttctcccttcaagctcctcccccatacacctttccttactttctttcgaattcat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cccatttctcccttcaagctcctcccccatacacctttccttactttctttcgaattcat 623
Query: 424 ggcctctttcttcatcagtcacagttacatgtaaatgtattatctgtctatctatctact 483
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 624 ggcctctttcttcatcagtcacagctacatgtaaatgtattatctgtctatctgtctact 683
Query: 484 ccatctgtatctctctctctct-------------------------------------- 505
||||||||||||||||||||||
Sbjct: 684 ccatctgtatctctctctctctctctctctctctctctctctctctctctatctatctat 743
Query: 506 ------gttcatgcatctatcaatccatccatccatgtatatttgtatgtatgtatgtat 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctatctgttcatgcatctatcaatccatccatccatgtatatttgtatgtatgtatgtat 803
Query: 560 gtatgtatgt 569
||||| ||||
Sbjct: 804 gtatg-atgt 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_m05.g1 MSMg01no177_m05.g1 CHROMAT_FILE:
MSMg01no177_m05.g1 PHD_FILE: MSMg01no177_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:23 2005
(346 letters)
>mm_chr2_169114370_169115115
Length = 746
Score = 586 bits (303), Expect = e-172
Identities = 335/349 (95%), Gaps = 7/349 (2%)
Strand = Plus / Minus
Query: 1 gaattctttaaactccccaggcatgacttcctatccggaagtacaaacaaaaagcaagag 60
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 351 gaattctttaaactccacaggcatgacttcttatccggaagtacaaacaaaaagcaagag 292
Query: 61 gccaggccgcagcaaggggttcctggataactgcattagtttccttgcttcggtggccac 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 291 gccaggccgcagcaaggggttcctggataactgcattagtttccttgctgcggtggccac 232
Query: 121 caccctgcagacccaaactaagaaagcgtcttgatttgaatatgcttggccaagggagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 caccctgcagacccaaactaagaaagcgtcttgatttgaatatgcttggccaagggagtg 172
Query: 181 gcactgttaagaggcatggctttgttggagtaggtgtgtcactgtgggcgtgggctttaa 240
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 171 gcactgtttagaggcatggctttgttggagtaggtgtgtcactgtgggagtgggctttaa 112
Query: 241 gttcctatcctaacttcctgaaagtcagtattctactagcagccttccgatgaagattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gttcctatcctaacttcctgaaagtcagtattctactagcagccttccgatgaagattta 52
Query: 301 gaactct--g-----cgagcatcgtgcctacctgggagttgtcctgttc 342
||||||| | || ||||||||||||||||| |||||||||||||
Sbjct: 51 gaactctcagctcttcgtgcatcgtgcctacctggaagttgtcctgttc 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
