BAC Information

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BAC

Clone NameMSMg01-177M18
Chromosome2 (Build37)
Map Location 112,264,427 - 112,265,077
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik
Downstream gene2900064A13Rik, Chrm5, Aven, Ryr3, 4930563P21Rik, Fmn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177M18.T7 (MSMg01no177_m18.b1)MSMg01-177M18.TJ (MSMg01no177_m18.g1)
ACCAG372080AG372081
length699700
length of high quality
(start - end)		642 (52 - 693)539 (83 - 621)
definitionCHROMAT_FILE: MSMg01no177_m18.b1 PHD_FILE: MSMg01no177_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:26 2005CHROMAT_FILE: MSMg01no177_m18.g1 PHD_FILE: MSMg01no177_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTATTACTCCACCCTAAATTTCCCATCTCCAAATACTGT
TAACTATGAGCAAAATTTGAGGCATATGGACTTCTAAGATGCCCATTTAA
CTAGCATACTTATATTATCTCAGCATCTCTCTTCAGATCAAAAAGCACTA
GGTTCAATTTTTTGGGTATATTGTGCTTCTTCTGTTTTTTGTTTGTTTGT
TTGTTTGTTTGTTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGT
CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACC
TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGCGCCACAACGCCCA
GCGTGTCTTCTGAAAATGCTTTGTTCACCTCAGCTCTGCCTGATGCATTC
AGTTAATCACTTTCCTGGGGACGTCTGTAGCTTCTGTGGCTAGTGCAGGC
CTCCACTAGACACTCAGTAGCCCTGTTTTCTTATTCCAACTTACCAGTGT
TCTATGATTGACTGTCTTCTCAGCTAGATTGGTAGGTCCATGAGGCCAGA
AGACTGGTCCCTCTCAATCCCTGGTACTTGGCACAAAGCCTGGCAAGTAA
GTGGCGTTTTTATTTCTTAGACAATTAGGCAAAACTGTGGGCTCTTTAG

NNNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTTGCTGAGTTAAA
GAGATAAACAGCCCTTCGTATAGAGAAAAAAGAGAACAATCTTACATGGC
CTTGGATGCTCTTAAGACTGCCCTAATGTTATCCCCAGCTATGGGACTCC
TAGATGTGACTGAGAACAAAGGTATTGCCAAAAGAAGTTCTTACTCAGAG
ATTGGAACCCTGAAAAAGACCTGTGGCATACTTGTAAAAAATTAGACCTG
GTGGCTGTAGGATGGCCTGCTTGTCTGCACATAGTGGCTTCTGGTCAAGG
ACGCAGATAAATTGACTCTGAGACAAAACTTGGCACATGTCTTAGAAAGT
GTGGTTCAGCCCCCAAGACCGATGGCTGACTAACGCTCTTGAAAGCATTA
TCCAACTGTTCCCCTGACTGATGGACACATTGTCAGAGCTTTTTGTTGAC
TGAACGAGTGACCTTCGCTCCCCCTGCTGTCCTCAATCTCACTACTGCCT
GAGACTTCACCTACTCATCATTGTGCTGACATTCTGGCAGAAGGAACTCA
TACTCGAAATGATCTGAAGGATCAGATCAGCCTTGGTCTGAGAGTTTGAA
CTGCCACACGGATGTCAGTTATCTGGAGGCCGCGGGTTAACCGCATCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_m18.b1 MSMg01no177_m18.b1 CHROMAT_FILE:
MSMg01no177_m18.b1 PHD_FILE: MSMg01no177_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:26 2005
         (642 letters)



>mm_chr2_112264223_112265267
          Length = 1045

 Score = 1168 bits (604), Expect = 0.0
 Identities = 634/652 (97%), Gaps = 15/652 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttattactccaccctaaatttcccatctccaaatactgttaactatgagcaaaa 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttattattccaccctaaatttcccatctccaaatactgttaactatgagcaaaa 264

                                                                       
Query: 65  tttgaggcatatggacttctaagatgcccatttaa---ctagcatacttatattatctca 121
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 265 tttgaggcatatggacttctaagatgcccatttaaacactagcatacttatattatctca 324

                                                                       
Query: 122 gcatctctcttcagatcaaaaagcactaggttcaattttttgggtatattgtgcttcttc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatctctcttcagatcaaaaagcactaggttcaattttttgggtatattgtgcttcttc 384

                                                                       
Query: 182 tgttttttgtttgtttgtttgtttgtttgttt-----------tttcaagacagggtttc 230
           ||||||||||||||||||||||||||||||||           |||||||||||||||||
Sbjct: 385 tgttttttgtttgtttgtttgtttgtttgtttgtttgtttgtttttcaagacagggtttc 444

                                                                       
Query: 231 tctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcag 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcag 504

                                                                       
Query: 291 aaatccacctgcctctgcctcccgagtgctgggattaaaggtgtgcgccacaacgcccag 350
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatccacctgcc-ctgcctcccgagtgctgggattaaaggtgtgcgccacaacgcccag 563

                                                                       
Query: 351 cgtgtcttctgaaaatgctttgttcacctcagctctgcctgatgcattcagttaatcact 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cgtgtcttctgaaaatgctttgttcacctcagctctgcctgatgcattcagttaatcact 623

                                                                       
Query: 411 ttcctggggacgtctgtagcttctgtggctagtgcaggcctccactagacactcagtagc 470
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcctggggaagtctgtagcttctgtggctagtgcaggcctccactagacactcagtagc 683

                                                                       
Query: 471 cctgttttcttattccaacttaccagtgttctatgattgactgtcttctcagctagattg 530
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 684 cctgttttcttattccaacttaccagtgttctatgattgactgtcttctcagctagcttg 743

                                                                       
Query: 531 gtaggtccatgaggccagaagactggtccctctcaatccctggtacttggcacaaagcct 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtaggtccatgaggccagaagactggtccctctcaatccctggtacttggcacaaagcct 803

                                                               
Query: 591 ggcaagtaagtggcgtttttatttcttagacaattaggcaaaactgtgggct 642
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggcaagtaagtggcgtttttatttcttagacaattaggcaaaactgtgggct 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1045
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1035
Effective search space:   654120
Effective search space used:   654120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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