BAC Information

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BAC

Clone NameMSMg01-178E20
Chromosome2 (Build37)
Map Location 146,214,508 - 146,214,822
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178E20.T7 (MSMg01no178_e20.b1)MSMg01-178E20.TJ (MSMg01no178_e20.g1)
ACCAG372427AG372428
length762726
length of high quality
(start - end)		322 (45 - 366)564 (77 - 640)
definitionCHROMAT_FILE: MSMg01no178_e20.b1 PHD_FILE: MSMg01no178_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:04 2005CHROMAT_FILE: MSMg01no178_e20.g1 PHD_FILE: MSMg01no178_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGTATAGCAATTAAGATTAAAAAATTGTTTAGAATTTGATGGAA
CAGGAAAAGATAATCTGTTAAGGTCAAACACTTGATTCTTTCAAATTGAA
TGCCCAACAAGAAAATAATGTACAATGGGGTGATCATGTGAAGATTTTAT
GAAGCAGGCAAGATGAGGGAGATTTTGAATACGATGAGTACCATGATACA
GCCNNACCCAGAGTCTTAGGGTACAGAAACTCCTGTGTTGGTTGGGTGGT
TTACTGAGCATAGAATTCTCATACTAAGAAGTTTCACCCCCTTTAGGTCT
AAGGAATACATGCAACTGATNNNNTAGTCACCATTTATCCCCAATAACCC
ACAACAGCTCTCTGTTTCCCCCCCCCCTGAAGAACAACCCCCTTTCAGTA
CATCNNNNCNCCNTCATCCTAANNCATTTTTATATTGCACTGGTTTTGGG
GTTCTCTTTTCCGANTCTGCCCCCTTNNNNNATATCGGNNNNAATATCTT
AATCGTAAGNNNNNNNNNNNNNGNNNCTACCTTTCGGGTTAAAAAAAAAC
TGGGGGGGGCCTTCCCTCNCCCCTCAACTTATTTCTTCCACTCACCAATA
TCTAATCCCTTGGCNNNNNNNCCCCCCCATAACCCTACCAATTTTCCCTT
TCCCTTCCCTATTAANNNCTCNATTATCTAACTTATATTATTTATTTTAA
TCATTACTCATG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCGACACACTATTGGCTT
ATTCAAACATTAACAGAAAGATTACAGGGCATCAGGACTTTGTTCCTGTG
GGCTGGGGGCTTATCTTTGTTCACATAGCAACCAGTTGATGTATGACTTT
ACCCGGCATCAAGGGGCAGTAGACAGAGGGGAGGTTCCGGCCAGGTGGTG
TTGACCCAGACAAGATAACCCTGCTTGTACAATCAAGCTGTTCTTAGGAA
TATCTTAACAGCCCTGTTCTGCTTTGTTCTCTGTCCCAGGCTGCCGGGGG
CTCATAGACAACTTTTTTACATGAATCACAAGATACAAAATCTCATTTTC
TTTCAAAAGGAAAGCCTGCGCCCAAAGCCCAGCCCCATCACTTATGATAT
CGGTATCACTGAACAACTTAGAACCTCTCAGTATCTCAGTCCTTCCTCCC
ATCTGTACAATGGGATCACGGTCGTCTCCATCTCAAAAGGCTGTTATGTG
GCCTGTATGGTGATGTGGGCATTTAAACCCCAATACTCTTCATAGCAGAG
ACTTCTATGAGTTTGTTTGTGGACAGCAAGGGCGACAGATAGAAACCCTG
TCTCAAACAAACAACAAACTAACAAACTAGAAAGACGCTCAGAGAGAATA
TATGAACTTAGATACTTCACGAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_e20.b1 MSMg01no178_e20.b1 CHROMAT_FILE:
MSMg01no178_e20.b1 PHD_FILE: MSMg01no178_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:04 2005
         (322 letters)



>mm_chr2_146214304_146215024
          Length = 721

 Score =  540 bits (279), Expect = e-158
 Identities = 308/318 (96%), Gaps = 5/318 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggtatagcaattaagattaaaaaattgtttagaatttgatggaacaggaaaa 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggtaaagaaattaagattaaaaaattgtttagaatttgatggaacaggaaaa 264

                                                                       
Query: 65  gataatctgttaaggtcaaacacttgattctttcaaattgaatgcccaacaagaaaataa 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 gataatctgttaaggtcaaacacttgattctttcaaattgaatgcccaacaagaaa-taa 323

                                                                       
Query: 125 tgtacaatggggtgatcatgtgaagattttatgaagcaggcaagatgagggagattttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtacaatggggtgatcatgtgaagattttatgaagcaggcaagatgagggagattttga 383

                                                                       
Query: 185 atacgatgagtaccatgata-cagccnnacccagagtcttagggtacagaaac-tcctgt 242
           |||||||||||||||||||| ||| |  ||||||||||||||||||||||||| || |||
Sbjct: 384 atacgatgagtaccatgatagcaggcg-acccagagtcttagggtacagaaacatc-tgt 441

                                                                       
Query: 243 gttggttgggtggtttactgagcatagaattctcatactaagaagtttcaccccctttag 302
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 442 gttggttgggtggtttactgagcatagaattcgcatactaagaagtttcaccccctttag 501

                             
Query: 303 gtctaaggaatacatgca 320
           ||||||||||||||||||
Sbjct: 502 gtctaaggaatacatgca 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space:   222856
Effective search space used:   222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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