Query= MSMg01no178_i24.b1 MSMg01no178_i24.b1 CHROMAT_FILE:
MSMg01no178_i24.b1 PHD_FILE: MSMg01no178_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:23 2005
(248 letters)
>mm_chr2_32073618_32074265
Length = 648
Score = 387 bits (200), Expect = e-112
Identities = 233/244 (95%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 6 gaattctattgaggtc-accagagtatggctgagtgtgctggcacaggcctttcacctca 64
|||||||||||||| | ||||||||||| || ||||| ||||||| ||||| ||||||||
Sbjct: 205 gaattctattgaggccaaccagagtatgactcagtgttctggcactggcctctcacctca 264
Query: 65 gcactcaggaggcagagacaggaggatcatgggagttccaggtcagccagagctacataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcactcaggaggcagagacaggaggatcatgggagttccaggtcagccagagctacataa 324
Query: 125 gatcctgtctgaggaggctggctgttggaagaagctctcagattagtgcctgtatgtcag 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 gatcctgtctgaggaggctggctgttggaagaagctctcacattagtgcctgtatgtcag 384
Query: 185 atttagtcacaaatctcggtctttggagctctgtgccctacaaggcgggggtgggatggg 244
||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 385 atttagtcacaaatctcggtcttcggagctctgtgccctacaaggcggggttggggtggg 444
Query: 245 gtgg 248
||||
Sbjct: 445 gtgg 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no178_i24.g1 MSMg01no178_i24.g1 CHROMAT_FILE:
MSMg01no178_i24.g1 PHD_FILE: MSMg01no178_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:23 2005
(536 letters)
>mm_chr2_32234183_32235118
Length = 936
Score = 998 bits (516), Expect = 0.0
Identities = 531/536 (99%)
Strand = Plus / Minus
Query: 1 aacagcttggggaggcccctggcgatgccagcccctaggtgccgcgagcccccatccagg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 736 aacagcttggggaggcccctggcgatgccagcccctaggtgccgggagcccccatccagg 677
Query: 61 ccctaccctcacctctctaggccatgttctggcctgggtagatactacttggcttagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ccctaccctcacctctctaggccatgttctggcctgggtagatactacttggcttagaca 617
Query: 121 ccatctcgggtactggcctccagatcctagtgggtctaccagcctggaccagtccccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccatctcgggtactggcctccagatcctagtgggtctaccagcctggaccagtccccatt 557
Query: 181 cactgcccatcacccttcctggagtcaggtgcaatcctacagttctcccacttgtctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cactgcccatcacccttcctggagtcaggtgcaatcctacagttctcccacttgtctgtc 497
Query: 241 ttctttcccctccatccagactgagagtccgaattaaagatgtctcccacaccactgccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttctttcccctccatccagactgagagtccgaattaaagatgtctcccacaccactgccc 437
Query: 301 ccttcttctttgtgcccagatgaggaccctagtagccaccgcagggcagtggagcagaga 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 436 ccttcttctttgtgcccagatgaggaccctagtagccaccggagggcagtggagcagaga 377
Query: 361 ccatgacccatgggccatgtgatggggctctgagccacctttcatttccaagggtgtggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccatgacccatgggccatgtgatggggctctgagccacctttcatttccaagggtgtggg 317
Query: 421 tgaggtcaggcttcctctctggctggtgtgttgctctggcggctgcttcccagctgatgc 480
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 316 tgaggtcaggcttcctccctggctggtgtgttgctctggcagctgcttcccagctgatgc 257
Query: 481 aggcacactgtgtgactgagatacagtcagactccctgggcactatggcctttcgc 536
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 256 aggcacactgtgtgactgagatacagtcagactccctgggcactagggcctttcgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
