CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATGGTTACCACCTTTTGTTGTACAAACCTTGCTCCTTAATTTA
AAACTATTGGTTGAATAAAAATGGCTACAGCCAATTACTGGATTAGAGGT
AGGTGTGTTTTGATTTGGGGGTTGCAGAGCACCAGACACGAATCCACCCT
CCATGCCATTCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCACCCACTATGCCCACCCCCCATTG
GACTCCTCTCCTATTTCTCACCATTATGTTTCATTGACCCCCGGCCAAAT
CCACATTACGCCTGTGGCCGCCCCCCCCCTCCCACCGATATCGCCTCCCA
GTACCGAATCGACCTTCTCCCCCCCCCGGTCAAAGCCCCCCGTACGTGTT
CCGACAACCCCCGCCATACAACCTTTTTCACCCCCCACAGCACCCGTATT
ACGCCATACCGACTGTCCCTGCCTGTCTCCCCGCACCCTTCCCCCCCTGA
CCCCCCCCCTTACCTCCAACATTCCCTTCCTATGTTTCCCTTATTCCCCC
TTCACCCCCCCCCTTACCCCCCGATTCTCCCTCCCGCTTTATCCCCTTCC
CCCCTTCCCCCTTTTTCCCCCTTTTCTTCTCTTCTCCCTTCCTCGCCCCA
TTATCCCTCTTCCTCCCATTTTTTACCATTTTTCCCTTAATCCCCCCCTT
ACCCCCTTCTTTTCCCCCC

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGGCTAAAGAGAGGAAATGCTGGCA
GGGAGCTGCACCCAAATTCATTGGCTCAGGCTATTATACTACTTCTATTT
TGCATTAATTTTTAAAACGAGTGGTCCAAATTTAGGCCAGGCAGGAAGGA
TTTGAAAGAAAAAAACCCCAGAAAATAGATAGAAAGAAAAGCTCTATGAG
TCCCTTAATCTTTGTTTTGAGACAAATTCCTATACAATCAGAGTGAGCCT
AGTACCACTGTCTCTCAGAAAGTGTAGTTCCATCCTTGATGCTGCTGATG
TCATCAGGCAGATAATTTGCTGCTGCAGTGAGGGGCTGTCTTTAGGAGTG
TCTCTGGACTCTTCTCACTAGATGCCAGTGACAGTCCCTCCCGCCCACCC
CCTGAACAACTAAAAATATTTCCAGACATCATCAAATGTCCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCT
CTTTCTCTCTCTCTCTCTCTCTCTATCACTCTCTTCTCTCTCTCTCTCTC
TGTGTGTGTGTGTGTGTATGTTGGCTTTTGCTCCTCCCTTTCCCCATTTA
CTTCTCTTTCTTGCTCTCTCTGTTGTTTTCCCCCCCCCCCTACTTACTTT
TTTTTTCCCCCTTTTCCTCTCCCATCCCCTCCCCCTTTTTTCTTTTCC

Query= MSMg01no179_a21.g1 MSMg01no179_a21.g1 CHROMAT_FILE:
MSMg01no179_a21.g1 PHD_FILE: MSMg01no179_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:58 2005
         (500 letters)



>mm_chr2_116930098_116930997
          Length = 900

 Score =  826 bits (427), Expect = 0.0
 Identities = 442/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggctaaagagaggaaatgctggcagggagctgcacccaaattcattggctcaggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggctaaagagaggaaatgctggcagggagctgcacccaaattcattggctcaggcta 260

                                                                       
Query: 61  ttatactacttctattttgcattaatttttaaaacgagtggtccaaatttaggccaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatactacttctattttgcattaatttttaaaacgagtggtccaaatttaggccaggca 320

                                                                       
Query: 121 ggaaggatttgaaagaaaaaaaccccagaaaatagatagaaagaaaagctctatgagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaggatttgaaagaaaaaaaccccagaaaatagatagaaagaaaagctctatgagtcc 380

                                                                       
Query: 181 cttaatctttgttttgagacaaattcctatacaatcagagtgagcctagtaccactgtct 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cttaatctttgttttgagacaaattcccatacaatcagagtgagcctagtaccactgtct 440

                                                                       
Query: 241 ctcagaaagtgtagttccatccttgatgctgctgatgtcatcaggcagataatttgctgc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagaaggtgtagttccatccttgatgctgctgatgtcatcaggcagataatttgctgc 500

                                                                       
Query: 301 tgcagtgaggggctgtctttaggagtgtctctggactcttctcactagatgccagtgaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcagtgaggggctgtctttaggagtgtctctggactcttctcactagatgccagtgaca 560

                                                                       
Query: 361 gtccctcccgcccaccccctgaacaactaaaaatatttccagacatcatcaaatgtcctc 420
            |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 ttccctcccacccaccccctgaacaactaaaaatatttccagacaacatcaaatgtcctc 620

                                      
Query: 421 tctctctctctctctctctctctctct 447
           |||||||||||||||||||||||||||
Sbjct: 621 tctctctctctctctctctctctctct 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)