Query= MSMg01no179_d16.b1 MSMg01no179_d16.b1 CHROMAT_FILE:
MSMg01no179_d16.b1 PHD_FILE: MSMg01no179_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:11 2005
(317 letters)
>mm_chr2_18690476_18691192
Length = 717
Score = 545 bits (282), Expect = e-159
Identities = 306/314 (97%)
Strand = Plus / Plus
Query: 4 ggaattctcctgtatcactttgtatttctttggaagttttggttaggcaaagtctgcagc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctgtatcaatttgtatttctttggaagttttggttaggcaaagtctgcagc 263
Query: 64 ttgactggactggctcgcaattcctatcagaccatctctccataagaagtaaatttaaga 123
||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggctggacaggcttgtaattcctatcagaccatctctccataagaagtaaatttaaga 323
Query: 124 tttcatgtattaatgttacaatcattccagtaattatggcaccctaatatggaacactag 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcatgtattaatgttacgatcattccagtaattatggcaccctaatatggaacactag 383
Query: 184 agacatcttttgaggtcatgctttcaagtgtatctaaccagtgaactatgtaaccagtga 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agacatcttttgaggtcacgctttcaagtgtatctaaccagtgaactatgtaaccagtga 443
Query: 244 acatccagtagtgtcagggactgtcaccggtgccacaggtacagcagggagcaaacaaag 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 acatccagtagtgtcagggactgtcactggtgccacaggtacagcagggagcaaacaaag 503
Query: 304 gtctccctgctctc 317
||||||||||||||
Sbjct: 504 gtctccctgctctc 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_d16.g1 MSMg01no179_d16.g1 CHROMAT_FILE:
MSMg01no179_d16.g1 PHD_FILE: MSMg01no179_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:11 2005
(571 letters)
>mm_chr2_18776398_18777367
Length = 970
Score = 1035 bits (535), Expect = 0.0
Identities = 562/571 (98%), Gaps = 1/571 (0%)
Strand = Plus / Minus
Query: 1 acacaacagccctctacttagtaatcctacttagagacaagaaaccaagtcacagaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 acacaacagccctctacttagtaatcctacttagagacaagaaaccaagtcacagaaaga 843
Query: 61 gccacatgctcagagacacgcagctaataattaggcgagcctagataagccgtagcagcc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 842 gccacatgctcagagacacgcagctaataattagacgagcctagataagccgtagcagcc 783
Query: 121 agcctgggtccaattccatctagaaccacgcgttttaatctgtatctcctggttggaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 agcctgggtccaattccatctagaaccacgcgttttaatctgtatctcctggttggaggt 723
Query: 181 gcagagtcggcccagggtcggcaggcaagtgagaggactggtcccacactgatctgtcca 240
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 722 gcagagtcagcccagggtcggcaggc-agtgagaggactggtcccacactgatctgtcca 664
Query: 241 gatgctggatacagagacaggagcgctagatggtgggaaaaggtttcctctgcttatatt 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 663 gatgctggatacagagacaggagcgctagatggtggggaaaggtttcctctgcttctacc 604
Query: 301 tttaggtgtgcttatgtgtttgtacatctcacagtagtagagatgccttatcttgaatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tttaggtgtgcttatgtgtttgtacatctcacagtagtagagatgccttatcttgaatcc 544
Query: 361 agcccctgccttgcctgtactgactagatccggatttgggtgtgttcttagcaccattct 420
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 543 agcccttgccttgcctgtactgactagatccggatttgggtgtgttctaagcaccattct 484
Query: 421 agggaaagcgtctgggagaggggcttctgccaaccgtattagactcctcacccacagctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agggaaagcgtctgggagaggggcttctgccaaccgtattagactcctcacccacagctg 424
Query: 481 ccctcctaaggacttgcctctttgcctcttgatccttccaataagcccttataagttgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccctcctaaggacttgcctctttgcctcttgatccttccaataagcccttataagttgct 364
Query: 541 taaccaatctggctgcccagttttgagcttg 571
|||||||||||||||||||||||||||||||
Sbjct: 363 taaccaatctggctgcccagttttgagcttg 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
