Query= MSMg01no179_e08.b1 MSMg01no179_e08.b1 CHROMAT_FILE:
MSMg01no179_e08.b1 PHD_FILE: MSMg01no179_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:14 2005
(436 letters)
>mm_chr2_114654945_114655780
Length = 836
Score = 625 bits (323), Expect = 0.0
Identities = 344/353 (97%), Gaps = 4/353 (1%)
Strand = Plus / Minus
Query: 5 gaattcaga----aggatgcctgattccttgctcattcgaaacccttgactcatcttgac 60
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaattcagaaggtaggatgcttgattccttgctcattcgaaacccttgactcatcttgac 294
Query: 61 attcaccaattagcaaaagtgtcaaatactctgaattcttttcatcagagccgggagcat 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 293 attcaccaattagcaaaagtgtcaaatactctgaattgttttcatcagagccgggagcat 234
Query: 121 gctaactttacagaatctctattgtgctccatcttatatactgctatagtcctagtgcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 233 gctaactttacagaatctctattgtgctccatcttatatactgctatagtcctggtgcca 174
Query: 181 aggagatgctctgatacataactggcatttagtccatattgatggataggtgaatactct 240
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 173 aggagatgctctgatacacaactggcatttagtccatattgttggataggtgaatactct 114
Query: 241 aggattgactcttactatgacagaagaaagccctgtggttcctttccaattgcagtgcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 aggattgactcttactatgacagaagaaagccctgtggttcctttccaattgcagtgcat 54
Query: 301 attcttaaccaagttcagttcttagcaccgacataggcagctcacagccagct 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 attcttaaccaagttcagttcttagcaccgacataggcagctcacagccagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_e08.g1 MSMg01no179_e08.g1 CHROMAT_FILE:
MSMg01no179_e08.g1 PHD_FILE: MSMg01no179_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:14 2005
(485 letters)
>mm_chr2_114561122_114562006
Length = 885
Score = 930 bits (481), Expect = 0.0
Identities = 484/485 (99%)
Strand = Plus / Plus
Query: 1 ccctttttatgtgtctttgaggtttctcaatatgatttaatcattgcccaagtgttattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctttttatgtgtctttgaggtttctcaatatgatttaatcattgcccaagtgttattt 260
Query: 61 ctgctttcatgtgaagaaaagcctctttcccacatctcatgtgaactttattatccttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctttcatgtgaagaaaagcctctttcccacatctcatgtgaactttattatccttga 320
Query: 121 tatctgtacgttgatgttgcatgcctcagtgtgtatctgatatcactgttcaaaagagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctgtacgttgatgttgcatgcctcagtgtgtatctgatatcactgttcaaaagagtg 380
Query: 181 aacaagactgctgaccagaaataagcacttgttggaaacttgtattcggcagtaaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaagactgctgaccagaaataagcacttgttggaaacttgtattcggcagtaaataaa 440
Query: 241 cagatttctcctctatatttttgcagggtaatataccatcacatcaagagctataagcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagatttctcctctatatttttgcagggtaatataccatcacatcaagagctataagcta 500
Query: 301 gtaaccacaaaaattccactggactcatatcttcatggggcaagcttgagtaattcacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaaccacaaaaattccactggactcatatcttcatggggcaagcttgagtaattcacca 560
Query: 361 actttggttgagtcttaggctctctgtctatacaatgtggttcttgttgtctttctacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actttggttgagtcttaggctctctgtctatacaatgtggttcttgttgtctttctacac 620
Query: 421 catacctggaataatttatgtgggtgtcaatttggaaaaagaagcaatgaagtttaataa 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 catacctggaataatttatgtggatgtcaatttggaaaaagaagcaatgaagtttaataa 680
Query: 481 gtgtc 485
|||||
Sbjct: 681 gtgtc 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
