BAC Information

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BAC

Clone NameMSMg01-179E10
Chromosome2 (Build37)
Map Location 3,419,802 - 3,420,205
singlet/doubletsinglet
Overlap geneHspa14
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2
Downstream geneArmetl1, LOC100040219, LOC666495, 3110001A13Rik, LOC100040257, LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179E10.T7 (MSMg01no179_e10.b1)MSMg01-179E10.TJ (MSMg01no179_e10.g1)
ACCAG373109AG373110
length866728
length of high quality
(start - end)
73 (44 - 116)406 (74 - 479)
definitionCHROMAT_FILE: MSMg01no179_e10.b1 PHD_FILE: MSMg01no179_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:15 2005CHROMAT_FILE: MSMg01no179_e10.g1 PHD_FILE: MSMg01no179_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTGCGTAAAGATCCGCGGA
ATTCCTTCTTTATTCAAATCTCCCAATTTTATTTATAAATTATAACACAG
ATCCTTTTTGTGTGGTGGGGTGCCAGGCCTTTCCCTTTTCCCCTCTCTTC
TTTCCTTTTCTCTCCCTCTTATTCTTTACTCTATTCTTATTCCACCTTCT
CTCCCTTATTATTTTTTATCTCACCCCCCATCCCCTTCCTCTTTTTTTTT
TTTCCTCCCCCCTTTTCTTCCTCTCCTCCCTCCCTACATTTTCTTCCCTT
ATCTTTTTTTTCCTTTCTCCTTTCCTCTTCTCTACCCATTTTTTTTTTTT
TCTTTCCCCTTCCCCTCCTTTACCCCCCCCCCTTTTCCTTTTTTTTCCCC
CCCCCCCTTCCCTCTTCCCCTTTTTCTTTCTCCTTTCTTTTCCTTTCTTT
CCCCTTTCTCCCCCCCTCCTACACCTTCTCCTTTTCTCTCCCTTTTACCA
CACTTTTCCCTCTACTTTTTCCCCTATCCCCCCCTCTTTTCCTTTCCCCC
CCCTTCCCTCCTTCTCTCTCTCTTTATTTCCTATCTTTTCCTCCCTTCTT
CTCTCCTCTCCTTATTTCCTCCCTTTTTTTCTTCATTTCCCCTCTCTTTT
CCTTCTCCTTTTCTCTCTCTTTTCCTACCTTCCCCCCCCTTTTCACACCC
CCTTTCCCCACCCTTCCCTCTTTTTTCATATTCTCTCCCTCTTATCCTCT
ACTCCCCCCCCCACTATTTTTCTTTCTCCCCACTTTCACATACAATCTAT
TTTTATTTCTCTACTTCCCCCCCCCTCCTACCCAACCCCTTCTCATATCT
TACTATTACCCCTCTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCAGAAATTCAAGCTTCTGAGTTATCGAGCAGCT
TAATAATTTTGTTGGCATATTCTTTATCTGTCCAGTGGGGTGAAAAGTAC
AGACTTCACCTTATGTGTCTACAATATTAACTTTTTAATGCTGAGATATC
TTTATATTTCCCCATGAACAGCTCTGCAGATCCACAAGCTCAGAAATACA
TCTCAGAAAGTAAATGCTTAGTAAGTATGGTTCCTTTACTCTCTCCCCCT
TATTCAAAGATTAATTACTAACAGTCATGACATAGAGTGTTAAACTGAGA
CTCATCTAAAGTTTTATTTAAATTATTCTATATTTGGTATAATTATAATT
TTTTTTTAGGTCATTGACAAAAATGGGAAGTTGCGGTATGAAATATATAC
AGGAGAAGAAACAAAACTTGTTAATCCAGATGATGTTGTCAGACTGATAT
TCAGTAAAATGAAAGGTACTGCACAGAAGTTAATAACTTACTTTATTTTG
TTTTGCAACTTCTTAAAATTATTTATTATTCATTTACATATACCTGTGTA
TGCGCCTGTATTTGTGCATTGCCTCGATTCTATAATAATTCCCTGAACCT
GCTATTTTTACCATTTGCGATCTGTTTGAGGTGCCTGCTGGACATTGCTT
CCTTTTCCTCCGCTTTTTTTTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_e10.g1 MSMg01no179_e10.g1 CHROMAT_FILE:
MSMg01no179_e10.g1 PHD_FILE: MSMg01no179_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:15 2005
         (406 letters)



>mm_chr2_3419718_3420523
          Length = 806

 Score =  743 bits (384), Expect = 0.0
 Identities = 400/406 (98%), Gaps = 2/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaagcttctgagttatcgagcagcttaataattttgttggcatattctttatctgtcc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttcaagcttctgagttattgagcagcttaataattttgttggcatattctttatctgtcc 429

                                                                       
Query: 61  agtggggtgaaaagtacagacttcaccttatgtgtctacaatattaactttttaatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 428 agtggggtgaaaagtacagacttcaccttatgtgtctacaatattaattttttaatgctg 369

                                                                       
Query: 121 agatatctttatatttccccatgaacagctctgcagatccacaagctcagaaatacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agatatctttatatttccccatgaacagctctgcagatccacaagctcagaaatacatct 309

                                                                       
Query: 181 cagaaagtaaatgcttagtaagtatggttcctttactctctcccccttattcaaagatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cagaaagtaaatgcttagtaagtatggttcctttactctctcccccttattcaaagatta 249

                                                                       
Query: 241 attactaacagtcatgacatagagtgttaaactgagactcatctaaagttttatttaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attactaacagtcatgacatagagtgttaaactgagactcatctaaagttttatttaaat 189

                                                                       
Query: 301 tattctatatttggtataattataatttttttttaggtcattgacaaaaatgggaagttg 360
           |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||
Sbjct: 188 tattctatatttggtataattataa--tttttttaggtcattgagaaaaatgggaagttg 131

                                                         
Query: 361 cggtatgaaatatatacaggagaagaaacaaaacttgttaatccag 406
           |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 130 cggtatgaaatagatacaggagaagaaacaaaacttgttaatccag 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)