BAC Information

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BAC

Clone NameMSMg01-179F13
Chromosome2 (Build37)
Map Location 174,769,434 - 174,769,760
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126, LOC100039017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179F13.T7 (MSMg01no179_f13.b1)MSMg01-179F13.TJ (MSMg01no179_f13.g1)
ACCAG373157AG373158
length748719
length of high quality
(start - end)
327 (64 - 390)287 (68 - 354)
definitionCHROMAT_FILE: MSMg01no179_f13.b1 PHD_FILE: MSMg01no179_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:20 2005CHROMAT_FILE: MSMg01no179_f13.g1 PHD_FILE: MSMg01no179_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCTC
TGTTGTACCAGCAGCAGATGCTCCAGCGACCGCTGTGTCAGTTTCTCCTC
CCAGCATTCCTATTACGTGTCAGTCACAGTATTCATCATCATTCCATAAT
TCTAGAATTTTCTGTGTGGTTTCTTCCTCTGTCTTAGTTCTCTATTCTGT
GGGATGAATAATTCTTATGTGCTGCAAACTGAACGGATTAGGAATTGAAC
TAACTTGGGCCACAGGACTAAAAACTGACAGATGGGACACAGGTATAGAA
AAGCTGGACTATTTGTTCTATGCATTCTGATGAGACTCACCAGTGGCTTG
TACACCATTGAGTGAGAGGTAGGTTTACTGCAAACAGCAGAACAAGGAGG
GCATATATCACCCCAACTTTTGTCAGGTAGACACTAAAAGACTAAGTGTT
CCTCAAGGGACTTTATTACCTATTCTAAGAACATAATGTTTTTGTAGTTG
TGTGTGTTATATTTTATGTAGAATTACTACCTTGTTGTTTTTAACTGGTA
GTTAAACCTGACTGGCAGATTTTTTTAGTCCTCTCTTTTGTTTTGTTTCT
GTCTATCACTTTGTTTTTATTTTCTTTCTCTAAATAGTACTAATAACATT
GTTTATTCATTCTACACTCATTATTCTCCATCTTTCTTTACCCCCCCTTT
TTATTATTTACCTCCGCTTTATTCTGATATTTTAACCCCCCCTTTTTG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCAGGCCTCGATCTCAGAA
ATCCACCTATTCTCTCCCTCCCTAGTGCTGGGATTAAAGGTGTGTACCAC
CACTGCCCGGCTCATTCTTATTTTTAAAGAGATTTTATATATGTCTGTTT
AGAGAAACATCTCCTGTAGCTCTTACTTTCTTTATGCCATGTAATGAGAC
TTACTTTGAACTCCTAATCCTGCCTCTGCCTCCCAGTGCTTGGAAAACAG
TCCTACAACGTTCAAGCTGGGTTCTGACTGATCAATGAGACAAAAGGCAC
CATTTTATGAGTGCTGCCTAACCTCCCTGGGTTACAGGGTTACAAATTAG
GGGATTACCCACAAAGAGGGACAGGTATAAGGTTGAGTTCACTGACCACC
TTTGAAGCTGGTCTACTTGCAGCACAGAAGAGGAGGAGGAATAAGGTAGG
TGAGGCCTTCCTGCTTTGGCAATAGTTGACATTAACCATGAGGAGTCAAG
TAATCTATTTTACCCAATCAGCATAATTCCATACTGGACATTTTGTGGCA
TTTCCCAGATTAGGGCAATGACTAATGAGATCATAATCCCTCTCTGTTAC
AGCATATTGCTGTGATACCCCACCATCTACCCCAGGAGTAGGGTTGCCCA
TCTCCCATTTGCCATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_f13.b1 MSMg01no179_f13.b1 CHROMAT_FILE:
MSMg01no179_f13.b1 PHD_FILE: MSMg01no179_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:20 2005
         (327 letters)



>mm_chr2_174769234_174769960
          Length = 727

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagatgctccagcgaccgctgtgtcagtttctcctcccagcattcctattacgtgtcag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gcagatgctccagcgaccgctgtgtcagtttctcctcccagcattcctattatgtgtcag 260

                                                                       
Query: 61  tcacagtattcatcatcattccataattctagaattttctgtgtggtttcttcctctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagtattcatcatcattccataattctagaattttctgtgtggtttcttcctctgtc 320

                                                                       
Query: 121 ttagttctctattctgtgggatgaataattcttatgtgctgcaaactgaacggattagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagttctctattctgtgggatgaataattcttatgtgctgcaaactgaacggattagga 380

                                                                       
Query: 181 attgaactaacttgggccacaggactaaaaactgacagatgggacacaggtatagaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgaactaacttgggccacaggactaaaaactgacagatgggacacaggtatagaaaag 440

                                                                       
Query: 241 ctggactatttgttctatgcattctgatgagactcaccagtggcttgtacaccattgagt 300
           ||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggactaggtgggctatgcattctgatgagactcaccagtggcttgtacaccattgagt 500

                                      
Query: 301 gagaggtaggtttactgcaaacagcag 327
           |||||||||||||||||||||||||||
Sbjct: 501 gagaggtaggtttactgcaaacagcag 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)