Query= MSMg01no179_h03.b1 MSMg01no179_h03.b1 CHROMAT_FILE:
MSMg01no179_h03.b1 PHD_FILE: MSMg01no179_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:28 2005
(682 letters)
>mm_chr2_85683555_85684636
Length = 1082
Score = 1257 bits (650), Expect = 0.0
Identities = 671/682 (98%), Gaps = 8/682 (1%)
Strand = Plus / Minus
Query: 5 gaattcat----aaagattcccactgttctgggaacaactagcagtgaatgttaatgcct 60
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gaattcataaagaaagat----actgttctgggaacaactagcagtgaatgttaatgcct 845
Query: 61 gcactttgatgtctacaacacaagagaacaaacagggtcctttgtggtgagtgaagcgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 844 gcactttgatgtctacaacacaagagaacaaacagggtcctttgtggtgagtgaagcatc 785
Query: 121 tgctcatattctcctctctttgaatgaaatattgaatctataatgaaggagggatttact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgctcatattctcctctctttgaatgaaatattgaatctataatgaaggagggatttact 725
Query: 181 gaaaatcacaatgttcaattgcatgacatagccaggtgtgggtgtgagacttaactcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaaaatcacaatgttcaattgcatgacatagccaggtgtgggtgtgagacttaactcatt 665
Query: 241 gcaaggtatctcttactcctgtacctattatagttcagtgtcgtgtctgtgaatcagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gcaaggtatctcttactcctgtacctattatagttcagtgtcgtgtctgtgaatcagaaa 605
Query: 301 taatatctgggtctgggtctttatctacaaaagtatacaattgacttttttcttttaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taatatctgggtctgggtctttatctacaaaagtatacaattgacttttttcttttaata 545
Query: 361 agattattgcaactcttactgaggagaaaggccatcttaaaaagggctatgctactacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agattattgcaactcttactgaggagaaaggccatcttaaaaagggctatgctactacaa 485
Query: 421 gtgcattaatatctgtgagaatgcatacatacttgccacagtccgtgtttgaatatgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtgcattaatatctgtgagaatgcatacatacttgccacagtccgtgtttgaatatgcat 425
Query: 481 gtaaatatgaaagaacagcctcaggtattggtctttcagcactttataccagaccaactg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtaaatatgaaagaacagcctcaggtattggtctttcagcactttataccagaccaactg 365
Query: 541 tcccttgagctgccagagattcatctgcccacctcccagctgtcctagaaacactgagac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcccttgagctgccagagattcatctgcccacctcccagctgtcctagaaacactgagac 305
Query: 601 tgcatatttgtgttattgtcccaagccttacatgaaactgagggtcaaaactcaaatctt 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 304 tgcatatttgtgttattgtcccaagccttacatgaaactgagggtccaaactcaaatctt 245
Query: 661 cactattgtgtggaaaccactt 682
| ||||||||||||||||||||
Sbjct: 244 ccctattgtgtggaaaccactt 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_h03.g1 MSMg01no179_h03.g1 CHROMAT_FILE:
MSMg01no179_h03.g1 PHD_FILE: MSMg01no179_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:28 2005
(504 letters)
>mm_chr2_85566684_85567587
Length = 904
Score = 938 bits (485), Expect = 0.0
Identities = 497/501 (99%)
Strand = Plus / Plus
Query: 1 ttaaaatatacgttcagcataaaaatatagaaaaccgcataagaggtggcgttgtaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttaaaatatacgttcagcataaaaatatagaaaaccgcataagaggtggtgttgtaatat 260
Query: 61 ctgtaaaaataaatttgtttcaacacaacactgacaagtagaaatcttctttgagagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtaaaaataaatttgtttcaacacaacactgacaagtagaaatcttctttgagagaca 320
Query: 121 gagactggggtttgtaggtgtcactggcttcatgaagcttcctggatcacaaaacaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagactggggtttgtaggtgtcactggcttcatgaagcttcctggatcacaaaacaaaac 380
Query: 181 aactgagcagttgtcaaattagattctgctcaattttcaatcacgaatatcctgtcatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgagcagttgtcaaattagattctgctcaattttcaatcacgaatatcctgtcatca 440
Query: 241 aaatgcttttacatatgtgttggactagaaaagataccttagagtgatactgattttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgcttttacatatgtgttggactagaaaagataccttagagtgatactgattttatt 500
Query: 301 cagctttcttttttgtgtcatttatttggttccaacattcatttaggtaaaacatttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagctttcttttttgtgtcatttatttggttccaacattcatttaggtaaaacatttatt 560
Query: 361 atattttatttattactaacatttatttcttagttattaaattttagtcttacttattac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattttatttattactaacatttatttcttagttattaaattttagtcttacttattac 620
Query: 421 aagtggatctttagtgccctgtgattgtgtgttttttcttaggtatgtcagtgggagtta 480
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct: 621 aagtggatctttagtgccctgtgattttttgttttttcttaggtatgtcagtggcagtta 680
Query: 481 aactttgttacctttgttacc 501
|||||||||||||||||||||
Sbjct: 681 aactttgttacctttgttacc 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
