BAC Information

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BAC

Clone NameMSMg01-179H15
Chromosome2 (Build37)
Map Location 42,764,956 - 42,765,292
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp1b, LOC625094
Downstream geneLOC100041228, LOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179H15.T7 (MSMg01no179_h15.b1)MSMg01-179H15.TJ (MSMg01no179_h15.g1)
ACCAG373252AG373253
length712714
length of high quality
(start - end)
663 (40 - 702)337 (378 - 714)
definitionCHROMAT_FILE: MSMg01no179_h15.b1 PHD_FILE: MSMg01no179_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:30 2005CHROMAT_FILE: MSMg01no179_h15.g1 PHD_FILE: MSMg01no179_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTATCCCTGTACCTATTATTGAATATGATTATTTGGTTTTCTGGAA
TCCAGCTTCTTGAGTTCTTTTTATATATTGGATACTAGTCTCCTATCAGA
TTTGGGATAGATAAAAATCCTTTCCCAATCTGTTGGTGGCCTTTTTGCCT
TATTGACAGTGTAGTTTACCTTAAAGAAGCTTTGTAATTTTATGAAGTCC
CATTTATGAGATTCTACCTCTCACCAGTCAGAATGGCTAACATCAAAAAT
TCAGGTGATAGAAGATGCTTGTGGGGATGTGGAGAAAGAGGAACACTCGT
CCATTGCTGATGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTT
GGCAGGTCCTCACAAAATTGGACAGAGTACTACTGGAAGATCCAGCAACA
CAACTCCTGGGCATATACCCAGAAGATGTTCCAACTTGTAATAAAGACAC
GTGCTCCACCATGCTCATAGCAACCTTATTTATAATAGCCAGAACCTGTT
AAGAACGCAGATGTCCCTGANAAGAGGAATGGACACAGAAAATGTGGTAT
GTTTGCACAATAGAGTACTACTCAGCAATGTAAAACAATGAATTTATGAA
ATTCTTCGGCAAATGGTTGGATCTTGAGGATATCATCCTGAGTGAGGTAA
ACAATCACAAAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACTTGATACTTACCAGCTACATGACATT
AGAACAGCTTTTGTCTTCCCATTGAGAATAAAAGAACCTACTTCATTAAA
ATTGACTTACATGCAAATGAGATGTGTGTAAGATATTTCTCCCAGTGTCT
GAAGACTAGTAAGCCACTGATGGTATTTTGTAACACTGCCCAATCTTGCT
GTTCTTATCATTATTAAACCTTGAGTCTATCATCATTAGAAAAATAAAGA
CTCTCCTGTGCCTCTCTGCTCAACATCCCAGAGTGCTCTTTTCACTATTC
CAAAGGTTTTATTAAGTCATGCACAGCCAAAGTTGCCTAACAAATTTCAG
CTAGAGTCCCATTCTGGTTAAAGACTGTGTTTTCAAGAATAATTGTTCTA
CATTGGCACAGCCAACTTCAAAAATTCAACCATAAAGATGCTAATGTCTC
TTTTCTGTAGAATATATACCCTACTTGGGTATCAGGATAAAGCAAGTCCC
TTTCTTTTCTTACCACCCAAACTTATTATCAAGTTTCTCATTCTAACTCA
GTTTTAAACTTTATAAGATAATGAGAAATTCACTGATTTGAAACTGTTCC
CCCATCATCCATTTAAGTTAGAACCCAAGGAGAAGGCAGGACTCCTTCTG
CAGAAATTATGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_h15.g1 MSMg01no179_h15.g1 CHROMAT_FILE:
MSMg01no179_h15.g1 PHD_FILE: MSMg01no179_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:30 2005
         (337 letters)



>mm_chr2_42764756_42765492
          Length = 737

 Score =  636 bits (329), Expect = 0.0
 Identities = 335/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagttgcctaacaaatttcagctagagtcccattctggttaaagactgtgttttcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagttgcctaacaaatttcagctagagtcccattctggttaaagactgtgttttcaag 260

                                                                       
Query: 61  aataattgttctacattggcacagccaacttcaaaaattcaaccataaagatgctaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aataattgttctacattggcacagccaacttcaaaaattcaaccataaaaatgctaatgt 320

                                                                       
Query: 121 ctcttttctgtagaatatataccctacttgggtatcaggataaagcaagtccctttcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttttctgtagaatatataccctacttgggtatcaggataaagcaagtccctttcttt 380

                                                                       
Query: 181 tcttaccacccaaacttattatcaagtttctcattctaactcagttttaaactttataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttaccacccaaacttattatcaagtttctcattctaactcagttttaaactttataag 440

                                                                       
Query: 241 ataatgagaaattcactgatttgaaactgttcccccatcatccatttaagttagaaccca 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataatgagaaattcactgatttgtaactgttcccccatcatccatttaagttagaaccca 500

                                                
Query: 301 aggagaaggcaggactccttctgcagaaattatgcca 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagaaggcaggactccttctgcagaaattatgcca 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)