BAC Information

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BAC

Clone NameMSMg01-180B23
Chromosome2 (Build37)
Map Location 158,752,362 - 158,752,547
singlet/doubletsinglet
Overlap genenone
Upstream geneGm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180B23.T7 (MSMg01no180_b23.b1)MSMg01-180B23.TJ (MSMg01no180_b23.g1)
ACCAG373691AG373692
length782744
length of high quality
(start - end)
---186 (122 - 307)
definitionCHROMAT_FILE: MSMg01no180_b23.b1 PHD_FILE: MSMg01no180_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:17 2005CHROMAT_FILE: MSMg01no180_b23.g1 PHD_FILE: MSMg01no180_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCAAANGANGCGCAGTTCCCCACCCGCNCGGAANCNCAGCAGTGACC
NGAGNNGAAGGANNAGAAGGAGGNANNNNNNNAGAGGNGAGNNNGGGTTT
GGCCCAAAAAAGAGGANNNNAAAAGGAAAGGAGGGGGAAAAGGAGGGAAN
NGAGAANAGANAGGGAGGGAGGGGGNNGNNNGGNANNNNGGGNGGGAGAA
NNGGAGGGGAAAAGAAGAAGGGGAGGAAGNTTTTTTTTTAGAGGAAGGAA
GAAAGAAAAAGGAAGGAAAGAAAATGGGAGAAGGAAAAAAAAAAATTTTT
GTGGTTTTANGAAAAGAAGGAAGAANAAGAAGGAGAAGGAGAGCCCCCCC
CCCANAAAAGAGAAAACCCGGCAAAGGCAAAAGGGAACGAGAAACCGCCC
AACAGAAAAAAAAAGAAAAGCAGAAAAAAAGAGAACCCCCCCCCCCCCCA
CCGANAACCACAACAAGGCCAGCACCACACCCCACCCCCGCACGCAAGAG
GACCGGACCGCCCCCGCCAACCCCCCAAACCCCCGCGCCACGGAGCCCAC
ACAGAACGAGAAGGAAAAGCGGCCACACCCCACAAAAAGAGAAGGAACAA
CCCCGGCGCCGGCCGCCAACACCCCACACGAAACAACACAGACCCGACCA
CACCAGCCCGCACACGACCCACCAAAAGTCTTTTTTTTTTTTAATAGAGC
CAAATTTATCCCCACCCCCCCACCCAACACTCCTTTTTTTTTCCACCTCC
CACCACCCCTTTATTAAACCCCCCCCCCTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCTCTCAAATATTTACACATGATGGGATGATCAGGAGGC
TTATTAATACGACAAGAATTCATGTTAGTCCCCAAGAGTTCATCAGACAC
TGAAGTGCTTACAGTTCAAGCAAGGGTGTCACTTAACCTATAAGCCCTAA
AAGGAGGGGGCAGAAAGGTTGGGAGGGCTTAGGACAAACTTTAGATATAA
AGTGGGAATTCTAAGTAGATCTTCTCTAGAAGCCAAAGGACAGATGCCAA
TAAATGTATTTTTTCTACAGATAATGCACACTTTGCATAGTTGTCTGTTT
TTTGTCCGCCCCCCCCCCTCAATGGGAGATATAAGGAAAAGTCAGCAACT
TTGCCCATGGAACATAAAAAATGGTTGAAGATTTATATGTGCATAAATCT
GTTTGTTCCAGGCAAAGGAAATGGCATCTCACCATCATGGGCAGACATAT
TGGAGAAAGCCAGTTGGTGCTGCGCTGAGGATCCAAAAGGTTGGAGAGCA
AGTAGTCAAGTAGTCAAGCCATGTGGAGCTAGCATAGGAGTAAGGGGAGG
CCAGGGCAGAACAACCTACTGCTTGCTGAGGAGTGACAGCTCTGAATTAG
TTCTTACTGGTTTGCATTAAAGTCTGGTTTGGCACGCTATTTATTATTTC
TTCTTTTCAATTATCTGCCACCTGCATACTAGTCTTGTATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_b23.g1 MSMg01no180_b23.g1 CHROMAT_FILE:
MSMg01no180_b23.g1 PHD_FILE: MSMg01no180_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:17 2005
         (186 letters)



>mm_chr2_158752162_158752747
          Length = 586

 Score =  344 bits (178), Expect = 2e-99
 Identities = 184/186 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttagtccccaagagttcatcagacactgaagtgcttacagttcaagcaagggtgtca 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 386 atgttagtccccaagagttcatcagacactggagtgcttacagttcaagcaagggtgtca 327

                                                                       
Query: 61  cttaacctataagccctaaaaggagggggcagaaaggttgggagggcttaggacaaactt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttaacctataagtcctaaaaggagggggcagaaaggttgggagggcttaggacaaactt 267

                                                                       
Query: 121 tagatataaagtgggaattctaagtagatcttctctagaagccaaaggacagatgccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tagatataaagtgggaattctaagtagatcttctctagaagccaaaggacagatgccaat 207

                 
Query: 181 aaatgt 186
           ||||||
Sbjct: 206 aaatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)