Query= MSMg01no180_e02.b1 MSMg01no180_e02.b1 CHROMAT_FILE:
MSMg01no180_e02.b1 PHD_FILE: MSMg01no180_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:27 2005
(593 letters)
>mm_chr2_71806170_71807162
Length = 993
Score = 1096 bits (567), Expect = 0.0
Identities = 585/591 (98%), Gaps = 1/591 (0%)
Strand = Plus / Minus
Query: 4 ggaattc-aacagggcaggaacctagaggcaggagctgatgcagagaccataaaagagtt 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ggaattcaaacagggcaggaacctagaggcaggagctgatgcagagaccataaaagagtt 779
Query: 63 ctgcttactggcttgctacccagggcaaggtagattccttctctcagatgactctagctt 122
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 778 ctgcttactggcttgctacccagggcaaggtagaatccttctctcagatgactctagctt 719
Query: 123 gtgtcaaattgacataaaactatccagcacaggaagataggtttattcattgtgaccttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gtgtcaaattgacataaaactatccagcacaggaagataggtttattcattgtgaccttg 659
Query: 183 catggggaagtccttcccgtcatggtagagttcagctctccaagtccaaatgagaagaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 catggggaagtccttcccgtcatggtagagttcagctctccaagtccaaatgagaagaga 599
Query: 243 tccctccacctgcaactccttcagctgtctgtttgccagaagtctctaggatccaggctg 302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tccctccccctgcaactccttcagctgtctgtttgccagaagtctctaggatccaggctg 539
Query: 303 ctactgcctcctccaggacttgagctattcagatcttgtgcatacgggcatcatttcctc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctactgcctcctccaggacttgagctattcagatcttgtgcatacgggcatcatttcctc 479
Query: 363 caaacctaggccctgacatgcttaattaagacagtgctgtttgcagccaacataaccaat 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caaacctaggccctgacatgcttaattaagacagtgctgtttgcagccaacataaccaac 419
Query: 423 tcctctgccatcaggtctgctgtcttccgacaatcagtccatggagtaggggctcttgtg 482
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 418 tcctctgccatcaggtctgctgtcttccgacagtcggtccatggagtaggggctcttgtg 359
Query: 483 atccaatccaataaagttactgagcattttcattgtgctgggttttctgttaggctctga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atccaatccaataaagttactgagcattttcattgtgctgggttttctgttaggctctga 299
Query: 543 ggaaagagcagaaaacaaaattctctatttgcatggactgttgtggtagtg 593
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggaaagagcagaaaacaaaattctctatttgcatggactgttgtggtagtg 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_e02.g1 MSMg01no180_e02.g1 CHROMAT_FILE:
MSMg01no180_e02.g1 PHD_FILE: MSMg01no180_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:27 2005
(620 letters)
>mm_chr2_71763848_71764866
Length = 1019
Score = 1129 bits (584), Expect = 0.0
Identities = 611/620 (98%), Gaps = 1/620 (0%)
Strand = Plus / Plus
Query: 1 aatgattccagattcaaatgtggcctccaaaggagctaggagaaccagactctgttgtaa 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 201 aatgattccagattcaaatgtggcctccaaaggaggtaggagaaccagactctattgtaa 260
Query: 61 ccatttaccaacttgatttataattctgtttagacaaatgattttgtgggcttccattag 120
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatttaccagcttgatttataattctgtttagacaaatgattttgtgggcttccattag 320
Query: 121 catacttgttccagacctaataagtgttagaggtcagttggccgcacacatagtctcatg 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 catacttgttccagacctaataagtgttagaggtcagttggccacacacatagtctcatg 380
Query: 181 gggaaaaaaaaaaccctctgtattcccaattttatagagtctttagctttcattactcat 240
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ggg-aaaaaaaaaccctctgtattcccaattatatagagtctttagctttcattactcat 439
Query: 241 ttctgagattcacccatgaatcagacagttttacagagaggcagggttgaggagcaaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttctgagattcacccatgaatcagacagttttacagagaggcagggttgaggagcaaccc 499
Query: 301 tgagataaggctttagataagacaaaaagaagattattgttagggtaggaaaagagactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgagataaggctttagataagacaaaaagaagattattgttagggtaggaaaagagactt 559
Query: 361 aaaatgtgccatgaaaatcacaaacaacagcaacaataacaaaaaacagccaagaaccca 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 560 aaaatgtgccatgaaaatcacaaacaacagcaacaataacaaaaaacacccaagaaccca 619
Query: 421 acacaattagctgctggcatgtcaaatcaggcagtgtggtggcatggtaagttcagagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acacaattagctgctggcatgtcaaatcaggcagtgtggtggcatggtaagttcagagac 679
Query: 481 tgcacagggtaacacagcagttgagagtcttagctctgagaatatagccagcattgatat 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgcacggggtaacacagcagttgagagtcttagctctgagaatatagccagcattgatat 739
Query: 541 cctggatacaagatgcacaacctttgggtaatttaacttcttctgtgcccagtttctttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cctggatacaagatgcacaacctttgggtaatttaacttcttctgtgcccagtttctttt 799
Query: 601 ctgtaaagagagaataacaa 620
||||||||||||||||||||
Sbjct: 800 ctgtaaagagagaataacaa 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space: 615490
Effective search space used: 615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
