BAC Information

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BAC

Clone NameMSMg01-180E20
Chromosome2 (Build37)
Map Location 153,513,564 - 153,514,071
singlet/doubletsinglet
Overlap genenone
Upstream geneH13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b
Downstream geneLOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180E20.T7 (MSMg01no180_e20.b1)MSMg01-180E20.TJ (MSMg01no180_e20.g1)
ACCAG373821AG373822
length720720
length of high quality
(start - end)		332 (380 - 711)537 (72 - 608)
definitionCHROMAT_FILE: MSMg01no180_e20.b1 PHD_FILE: MSMg01no180_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:30 2005CHROMAT_FILE: MSMg01no180_e20.g1 PHD_FILE: MSMg01no180_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAATCCCAGCAACCACATGGTGGCTCACAACCATGCGTAATGAGATCTGA
CGCCCTCTTCTGGTGTGTCACCAAGACAGCTACAGTGTACTTAGGTATCG
AGCTGGGCCGACTGGAGCAAGCAGGGCTGACCAGAGTGGGCAACTTTCAT
TCCCAGCAACCACATGATGGCTCACAACCATAATCAGTACAGCTACCTTA
TACTCATATACATTAAATAAATAAATAAATAAATCTTAAACAAAAACAAA
CCCAAAAAGTAAGCCAAACCAACTAAACAAACAAAAACCATCTGCAGCTC
TGCAGTGATATTTCCATGAAATGCACCAAAAATTAATTTCTAGAGATATG
AATAAAAAAGGCACAGCACACAAGATAGAAGTTCTGTGATCTCAGTCCTC
AGAGGCTGAGATAGGAGACCTGTTGACAGTTCAAAGCCATCCAGGGCTAC
ACAGCAAGTATCCCACTAGCCTGGGCTACAAAGTGAGACACTGTTTCCAA
AAAACAAACAAGCAAGCAAACAAACCAAACAGCTTGGTCAGAAAGTGCTG
TGTAAGCATGAGGCTTGAGTCAGAGCCCTGAGAACTCACTTAGTAAAGCT
CTGGGTGGTGGTGGTGATGCTCGATTGAATCCCAGCACTGGGGCCTGGCC
AGCCAGCTAGCTTAATAGAT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTGTTTGTTGAAGGACACCTGCGCACA
ACATGTATGCCTGGTACCTGCCACTCCAGAAGCCAGAAGAGGGCAATGGC
TTCCCTGGAACTGAAGTGGTTCTGTGGGTGCTGTAACCAAACATTGGTCT
CTGGAAGAGCAAAGAGCTATTCAACCACCCCTCTAGCCTGTGGGTTGGGT
TTGTTTTGATTTGAATAGGATCCCCAGGCAATAATGTTATACAAAAGCAG
AACTAAGCAAAAGATGCGAACCATTTCACTTACACCTCACACGCGGCTCC
GTTAACCGTGTTATTTGGCTCCGTTAACCGTGGCACTGTTATAATTGACC
ACGTTTACCAACCAATGACTACAGGTCACAGTTTTTACAATTAAACTTAA
ATTACTCACTAAGTCTCATGATTCTTGGTAACTAACCAAGAATGACACAG
GTCAGCATATTTATTTGTTATGACTGTCCTTCTGTTAAGGCCATGGGATC
CAGCAGGTCACTGTTTTACTCACGATGTTGTCCAGGCTGGCCTGGAACTC
ACCTGGTTCTGTATTAGAGAACTATGGGAGTAAAGACAGCGGCTCACAAT
CACGGCAGTAAGCCTCAAGCCAGTACACATCAGCAGATAAAAAACACACA
GCATGTTATATATGAATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_e20.g1 MSMg01no180_e20.g1 CHROMAT_FILE:
MSMg01no180_e20.g1 PHD_FILE: MSMg01no180_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:30 2005
         (537 letters)



>mm_chr2_153513431_153514367
          Length = 937

 Score =  818 bits (423), Expect = 0.0
 Identities = 495/537 (92%), Gaps = 29/537 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgtttgttgaaggacacctgcgcacaacatgtatgcctggtacctgccactccagaa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 641 ttttgtttgttgaaggacacctgcacacaacatgtatgcctggtacctgtcactccagaa 582

                                                                       
Query: 61  gccagaagagggcaatggcttccctggaactgaagtggttctgtgggtgctgtaaccaaa 120
           | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 581 gtcagaagagggcaatggcttccctggaactgaggtggttctgtgggtgctgtaaccaaa 522

                                                                       
Query: 121 cattggtctctggaagagcaaagagctattcaaccacccctctagcctgtgggttgggtt 180
           | ||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||
Sbjct: 521 cgttggtctctggaagagcaatgagctactcaaccacccctttagcctgggggttgggtt 462

                                                                       
Query: 181 tgttttgatttgaataggatccccaggcaataatgttatacaaaagcagaactaagcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 461 tgttttgatttgaataggatccccaggcaataatgttatacaaaagcagaactaagccaa 402

                                                                       
Query: 241 agatgcgaaccatttcacttacacctcacacgcggctccgttaaccgtgttatttggctc 300
           |||||||||||||||||||||||||||||||            |||              
Sbjct: 401 agatgcgaaccatttcacttacacctcacac------------acc-------------- 368

                                                                       
Query: 301 cgttaaccgtggcactgttataattgaccacgtttaccaaccaatgactacaggtcacag 360
              ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ---taaccgtggcattgttataattgaccacgtttaccaaccaatgactacaggtcacag 311

                                                                       
Query: 361 tttttacaattaaacttaaattactcactaagtctcatgattcttggtaactaaccaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttttacaattaaacttaaattactcactaagtctcatgattcttggtaactaaccaaga 251

                                                                       
Query: 421 atgacacaggtcagcatatttatttgttatgactgtccttctgttaaggccatgggatcc 480
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 acgacacaggtcagcatgtttatttgttatgactgtccttctgttaaggccatgggatcc 191

                                                                    
Query: 481 agcaggtcactgttttactcacgatgttgtccaggctggcctggaactcacctggtt 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agcaggtcactgttttactcacgatgttgtccaggctggcctggaactcacctggtt 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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