BAC Information

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BAC

Clone NameMSMg01-180F18
Chromosome2 (Build37)
Map Location 84,337,354 - 84,337,678
singlet/doubletsinglet
Overlap genenone
Upstream geneZc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi
Downstream geneLOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180F18.T7 (MSMg01no180_f18.b1)MSMg01-180F18.TJ (MSMg01no180_f18.g1)
ACCAG373860AG373861
length732723
length of high quality
(start - end)
569 (115 - 683)505 (70 - 574)
definitionCHROMAT_FILE: MSMg01no180_f18.b1 PHD_FILE: MSMg01no180_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:35 2005CHROMAT_FILE: MSMg01no180_f18.g1 PHD_FILE: MSMg01no180_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTT
GTTACGCAATTAACTGAAATCTCTTCACCTTAACCTCAGGCAGACTCTTC
AGAACATAAACCCGTCATATTCTTCACCAAAATATAACAAGAACAGTCTC
TAGGCTACATACTAATAATCTTCTCCTTTGATAACTCTTGAGCCAGGTCA
CCACTGTTCAAATCACCCTCAACACCAATGTCTTCCATATTCCTACAACG
ATGGCTCATTAAGCTCCACTTAGAGCATCTTACTGCCTTCCAAAGGCTCC
AAAATCCTTTTTCCTTCAAACAAAAGCATGGTCAGGAATATTACAGCAAT
GTCCCAGTCCCTGGTCCCAACTTCTCTCTTAGTTAGGGTTTCCATTACTG
ACAACACACACCATGACCAAGGCAACTCTTATAAAGACAGCATTTTATTG
ATGTTGGCTTACAGGTTCAGAGGTTCAGTCTATTGGTGGGAAGCATGGCA
GTGTTCAGGCAGACATGGTGCTAGATCTTGTTGCAAAGGCAAACAGAAGA
AGAATAGCGAAATGAGACATTTTTACATAGCCTTAATTGTATAAGAAGTC
CTAAAAATTTTGACTTTGAAATATTGTCATTAAAATATAGCCTATATTAA
CATAAAATTCACCTGATAATGCCTTCATACTCATTAATTTAAGCCCTTTG
ACTTTTCTTACTCTTAAGGGTCTCTTCCTTCN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACTTGAAAAATGTTCCACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGATGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCACCACGAAACTCACACAATATGTATTCACTGATAAGTGGATAT
TAGCCCCAAACCTAGGATACCGCAGATATAAGATAAAATTTGTTAAACAC
ATGAAAATCAAGATAGATATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_f18.b1 MSMg01no180_f18.b1 CHROMAT_FILE:
MSMg01no180_f18.b1 PHD_FILE: MSMg01no180_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:35 2005
         (569 letters)



>mm_chr2_84336710_84337678
          Length = 969

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 245 ccctggtcccaacttctctcttagttagggtttccattactgacaacacacaccatgacc 304
           ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 969 ccctggtcccaacttctctcttagttagggtttccattactgagaagagacaccatgacc 910

                                                                       
Query: 305 aaggcaactcttataaagacagcattttattgatgttggcttacaggttcagaggttcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 aaggcaactcttataaagacagcattttattgatgttggcttacaggttcagaggttcag 850

                                                                       
Query: 365 tctattggtgggaagcatggcagtgttcaggcagacatggtgctagatcttgttgcaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tctattggtgggaagcatggcagtgttcaggcagacatggtgctagatcttgttgcaaag 790

                                                                       
Query: 425 gcaaacagaagaagaatagcgaaatgagacatttttacatagccttaattgtataagaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gcaaacagaagaagaatagcgaaatgagacatttttacatagccttaattgtataagaag 730

                                                                       
Query: 485 tcctaaaaattttgactttgaaatattgtcattaaaatatagcctatattaacataaaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tcctaaaaattttgactttgaaatattgtcattaaaatatagcctatattaacataaaat 670

                                    
Query: 545 tcacctgataatgccttcatactca 569
           |||||||||||||||||||||||||
Sbjct: 669 tcacctgataatgccttcatactca 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)