Query= MSMg01no180_f23.b1 MSMg01no180_f23.b1 CHROMAT_FILE:
MSMg01no180_f23.b1 PHD_FILE: MSMg01no180_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:35 2005
(644 letters)
>mm_chr2_55669453_55670495
Length = 1043
Score = 1191 bits (616), Expect = 0.0
Identities = 637/644 (98%), Gaps = 1/644 (0%)
Strand = Plus / Minus
Query: 1 aaacttgatctaatatggaattggctgttttttcacatactttttaagttgcacaaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 843 aaacttgatctaatatggaattggctgttttttcacatactttttaagttgcaaaaatac 784
Query: 61 acatcaacatagagataacatatgtgttcctcataatcaaaatatcccccttctgttttt 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 acatcaatatagagataacatatgtgttcctcataatcaaaatatcccccttctgttttt 724
Query: 121 ctcttactagcaaatgtttcttactatcaaactttaaaccttgtggtctaaagtagatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctcttactagcaaatgtttcttactatcaaactttaaaccttgtggtctaaagtagatcc 664
Query: 181 taggtagaacaaaagaaatggaaattgtaaactagagctacatttactaagtatataatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 taggtagaacaaaagaaatggaaattgtaaactagagctacatttactaagtatataatt 604
Query: 241 gaactgaaacatttgctttaattttcactagaaaacagatataatgatactttgaaccgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gaactgaaacatttgctttaattttcactagaaaacagatataatgatactttgaaccgt 544
Query: 301 ttgtatttaatagaattcttgatgtgaaatacatataccattggagttaaagagagagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttgtatttaatagaattcttgatgtgaaatacatataccattggagttaaagagagagtc 484
Query: 361 ttgcttcctatggtaaggttctttatggcttctgtgctttccttctgcctcatgcatatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttgcttcctatggtaaggttctttatggcttctgtgctttccttctgcctcatgcatatg 424
Query: 421 cataatttgcatatgcatatgccctccttggggattttgcttctaagtatgacagaaaga 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 423 cataatttgcatatgcatatgcccttcttggggattttgcttctaagtatgacagaaaga 364
Query: 481 taaaatcctggttaatgaaatgtgtatgacagaaccattcactgtcccagagctgaacaa 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 363 taaaatcctggttaatgaaatgtgtatgacagaaccattccctgtcccagagctgaacaa 304
Query: 541 aaactgatctgaagtacaaacttatgtttcttaaagaaattatcactttaatttaaggta 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 303 aaactgatctgaagtacaaacttatgtttcttaaagaaattatcactttaatttaaagta 244
Query: 601 gcatttccctaagtctgaaactaggggggggaaaagctatccac 644
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 243 gcatttccctaagtctgaaactagggggga-aaaagctatccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space: 654922
Effective search space used: 654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_f23.g1 MSMg01no180_f23.g1 CHROMAT_FILE:
MSMg01no180_f23.g1 PHD_FILE: MSMg01no180_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:36 2005
(682 letters)
>mm_chr2_55504648_55505729
Length = 1082
Score = 1181 bits (611), Expect = 0.0
Identities = 668/691 (96%), Gaps = 10/691 (1%)
Strand = Plus / Plus
Query: 1 aagtcaaatggagacagatttgtttggattgtgatttttctgaattcac------cccat 54
|||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct: 195 aagtcaaatggagacagaattgtttggattgtgatttttctgaaagcagtgaatgcccat 254
Query: 55 gtatgtgtaacaactaccacatcatttgcagctggtattaaccagttgtgtgggtgctgt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtatgtgtaacaactaccacatcatttgcagctggtattaaccagttgtgtgggtgctgt 314
Query: 115 atattactaacttctttccttcctggtttgaaacattcagtgtgaaggattataatattt 174
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atattactaacttctttcctttctggtttgaaacattcagtgtgaaggattataatattt 374
Query: 175 ttaagtgctcacttcaaagatatctatgaatgatcactataataagaatggtattaatat 234
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttaagtgctcacttcaaggatacctatgaatgatcactataataagaatggtattaatat 434
Query: 235 ttcaatgtcggaatcattaataaaattatcatcgtaattatcatggaaagtatgcattaa 294
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 435 ttcaatgtcagaatcattaataaaattatcatagtaattatcatggaaagtatgcattaa 494
Query: 295 tatcttaccagcatgaactttttgagtttacttgtatcaggaatattaaagggagaacca 354
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tatcttaggagtatgaactttttgagtttacttgtatcaggaatattaaagggagaacca 554
Query: 355 cagggtcagaaagtttcgctgtgggattgtgtaatgtcataaaatagacctataaagtct 414
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cggggtcagaaagttt-gctgtgggattgtgtaatgtcataaaatagacctataaagtct 613
Query: 415 cataagcataataccacaaatatgagctgaacaaggatgtcaaaaatgaacatgccacaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cataagcataataccacaaatatgagctgaacaaggatgtcaaaaatgaacatgccacaa 673
Query: 475 tggatggtgcaaagcccctgaggcctcagccctacacaaatgactacaggcaactgagca 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tggatggtgcaaagcccctgaggcctcagccctacacaaatgactacaggcaactgagca 733
Query: 535 aaacttggagcaggagaaaatcttccccagggacaagcacaccagttgattatccaatac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aaacttggagcaggagaaaatcttccccagggacaagcacaccagttgattatccaatac 793
Query: 595 ccaatggtcagctctaaaa-tatacaaacaagtaaagtcgtacagacagagacagctatt 653
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ccaatggtcagctctaaaaatatacaaacaagtaaagtcgtacagacagagacagctatt 853
Query: 654 ttcagcaacaacccccccccc--gccacaca 682
||||||||||||||||||||| ||||||||
Sbjct: 854 ttcagcaacaaccccccccccccgccacaca 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
