BAC Information

Click to search

BAC

Clone NameMSMg01-180J05
Chromosome2 (Build37)
Map Location 8,078,469 - 8,078,881
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040648, LOC672230
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180J05.T7 (MSMg01no180_j05.b1)MSMg01-180J05.TJ (MSMg01no180_j05.g1)
ACCAG374015AG374016
length724726
length of high quality
(start - end)
687 (38 - 724)659 (68 - 726)
definitionCHROMAT_FILE: MSMg01no180_j05.b1 PHD_FILE: MSMg01no180_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:51 2005CHROMAT_FILE: MSMg01no180_j05.g1 PHD_FILE: MSMg01no180_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
CAAGGTCTTGTTATAAGTTCTCACTGAGAACACCCTTTTATACCCATTGT
GCCAATTAGCTGCCTCCTGTGGATTTCTACAGAGCTATATCTTTGGTAAT
CTTTCCTTTCAAACAAGGCGAGAAAAATGGCATGGTTTTTGGTTTTGGTT
TTGATTTGATTTGTTTTTAATGTAGCTTTCCAGAAGAATTTCCCTCCCAA
ACCATCCTTCAGGGTCACTTTAAATTGAGACTAAAATGCTATTGCCACCC
ACTTTAAAGTCCTGCTGGTATTAGAGGAAAAAAAAGACATATAAACTATG
TCTACAGTATTTCTTCTCCAGTTTTTTGTTCACAGAAAAGCCGATCTTTA
TATGCATGATAGATAGTGAGATAGATGATACACTTAGACAAAAGTAAGTA
TGATGAGCATTTGAGCCATGTGTTCACAGAATTTATTAATGCTTCCAGAA
TCCCCTAAAGCATGATTAAATACATGTCCCACACATTATCAAAGACAGGC
TAAACTACTTATGACCATTCTGTGCTGTTGACTGTTTCCTTCCCTATAAG
TTCTCTTACTTGGATTATGCTGGAAGTCATGTGGTCTGATGAGCTTGTTT
GTGTTTCAGAGTGCAAACATGGTTTGCAATTCCATTGTTCTCTGTTCCAA
AGCAAACAAACACTTCAGTATGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATACCTGCCTAGTTATAGAACAAGAGTGTCTT
AAAGAAGCAGGTAACTAAAGGTTGTATCTGGCCAGCAGATCACAGCCTGG
GTTCTAGCCTGGAAAGGCATTTTGGAAACCTGGAAGAGAAGAGGGGCTGG
GCTGCGCAAGATAAGGAAGGAACCAAGACAAAGGTCTTTGCTCAAGGTTC
AATTTTTACTATTCCGGCACTCCGTTATAAAGGAAGGGGGAGGGACCCGA
TTCCCGCCAATTAATCTTGGGGTCCAATAGCAGGGTGACCACGTGTACGG
CTCAGCAAAGCGGCAGGTTCCAGCAGTGGGCGTGGCAGAACGATTGAGTC
AGCAAGCTCCATCCAGGTGTAAACAGTGGAACCATTAAGGCTGGGGGAGG
GGAGGCTACAAATAAAGATCTTTTGAGAGCAAATATACATGCTGATATGA
TTATTTATTAGTTAGGAACAAGAAATAAATATCTATAGTTAATACTATCT
CTTGCGCACGCTGGACTGGCCAGCAGTAACGACGCTGCAACAGGATCCTT
CTGCACACATTTATTGGGAGAGCTTGATTGCAGAGGCGAAGAGACCCCGA
GCCCAGAACTGGTGCTGCTTATATAGGCCTAGGAGAGGCGAGTCTCATAC
CCGGATTGGTTATGCACTAAGCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_j05.b1 MSMg01no180_j05.b1 CHROMAT_FILE:
MSMg01no180_j05.b1 PHD_FILE: MSMg01no180_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:51 2005
         (687 letters)



>mm_chr2_8077795_8078881
          Length = 1087

 Score =  752 bits (389), Expect = 0.0
 Identities = 407/413 (98%)
 Strand = Plus / Minus

                                                                        
Query: 275  ctgctggtattagaggaaaaaaaagacatataaactatgtctacagtatttcttctccag 334
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1087 ctgctggtattagaggaaaaaaaagacatataaactatgtctacagtatttcttcttcag 1028

                                                                        
Query: 335  ttttttgttcacagaaaagccgatctttatatgcatgatagatagtgagatagatgatac 394
            ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 1027 ttttttgttcacagaaaagccaatctttatatacatgatagatagtgagatagatgatac 968

                                                                        
Query: 395  acttagacaaaagtaagtatgatgagcatttgagccatgtgttcacagaatttattaatg 454
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  acttagacaaaattaagtatgatgagcatttgagccatgtgttcacagaatttattaatg 908

                                                                        
Query: 455  cttccagaatcccctaaagcatgattaaatacatgtcccacacattatcaaagacaggct 514
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  cttccagaaccccctaaagcatgattaaatacatgtcccacacattatcaaagacaggct 848

                                                                        
Query: 515  aaactacttatgaccattctgtgctgttgactgtttccttccctataagttctcttactt 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847  aaactacttatgaccattctgtgctgttgactgtttccttccctataagttctcttactt 788

                                                                        
Query: 575  ggattatgctggaagtcatgtggtctgatgagcttgtttgtgtttcagagtgcaaacatg 634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  ggattatgctggaagtcatgtggtctgatgagcttgtttgtgtttcagagtgcaaacatg 728

                                                                 
Query: 635  gtttgcaattccattgttctctgttccaaagcaaacaaacacttcagtatgaa 687
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 727  gtttgcaattccattgttctctgttccaaagcaaacaaacgcttcagtatgaa 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)