BAC Information

Click to search

BAC

Clone NameMSMg01-180J18
Chromosome2 (Build37)
Map Location 75,829,818 - 75,830,061
singlet/doubletsinglet
Overlap genePde11a
Upstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1
Downstream geneCyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180J18.T7 (MSMg01no180_j18.b1)MSMg01-180J18.TJ (MSMg01no180_j18.g1)
ACCAG374038AG374039
length723768
length of high quality
(start - end)
176 (59 - 234)244 (64 - 307)
definitionCHROMAT_FILE: MSMg01no180_j18.b1 PHD_FILE: MSMg01no180_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:53 2005CHROMAT_FILE: MSMg01no180_j18.g1 PHD_FILE: MSMg01no180_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGGCACCCTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTGTTTGTCCATCCTCAGATTAATTTAAGGCAG
TGCTGGTTAGGGGGTCATAACTCCTTGTTTGTCCGGTTAGGCAGATCACT
TCCTGCTTCGAGTTTCAGTTCAAAATAGATTAGCCTTTCTTTCATTCTCT
ACATCACTGTTTAGTCAGGCATCATTATAGTGTACCTTGGCAACACTGCA
GTGCACCCTGGAAACACTGCAGAACAGTCTGCCACCACTGCCGAAAACCT
TAGCATCACTGCAGAACACCCCAGCACCTTTTATTGAACAGCCCTGCCAA
CCATTGGAGGAAGGGTGGAAAATATTTTTTTTAACACCCCCCCCCCGGCA
AGGGGTCCCTTCTTTGCCTTAAAAGGGGTTAAAGGGCCCCCCCCCAAAAA
AAAAAAAAACACCCCCCACCCCTTTTATATTTTTTTATAATAGGCCTAAA
AGGCGGCCAAAAAAAAATGGGGGAAAAAAGGGCGCTCCTCCCCCTCGGGG
GGGGTAAAAAAAATCGGTTGTTTCTTCTTTATGGAAAACCCTCCCGAAGG
ACAATCACCTCTTTATTAATTTTTTTGGGTTTTACACAACCCTTGTGATT
TAAAAAATAAAAAAACCCTTTGGGCCCCCATCATTTAAAAAAATAACTTA
TGTGTTCTCTCTATTTAAATAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCAAGACAAGTGGAAGGACTGGTTTTCCTCCGAAAGC
AAAATGTGGCCGGCCATGCTCAACACACAGACTGACATGGAGTGATGTAG
CTCTGAATGCCGTGGATGGGTCCCTGCCGAGTGTTCCTCTGGGTGTGTGT
GGGAGAGGACAGGTCTTCATGGGAGCCTGCTGACAGGACTCTGTTCTTCT
CCCGCAGACCTGTCCCTGTATCTGGTTGGCTTGGCTGCAAGCCCTCTTAA
CTTTCCCTGTATTCCTAACTTTGCACTTTAAAAACCTTAGAGTCCTTTTT
TTTCACCCCCCCGCCCTCCACTCTAGTAACATGTATGGTAACAGATAATG
CCCCCATTTAAACAAAAAGTGTAATAGTGGGCTGGAGAGTTTTGCTTAGC
TGTAACAAGTCACCCTTTATTTCCTTTTTTTTCCCCCTATCTATAAATAA
TTCCTCTCTTACTATATTTCTCCCTCTCTTCATCTTTAATTACTTTTTTC
ATCCCTACCCCTTGTATTCTCCATATTTTTTTTCTTTTTTTTTATTCTCC
CGCGCTCCTTTTTATTTTTTATTATACCCCCTTCCTCCAAAAATATATTT
TCTTATCCCCATTCCCCTTCCAACTATAAACTCACCGCCTCTTCTCCCCC
CTCTCTCCTTCTTTTCCTCTTACTCATCCCGTGTTACATCATTCTATTAT
CTATCTTCTCTTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_j18.g1 MSMg01no180_j18.g1 CHROMAT_FILE:
MSMg01no180_j18.g1 PHD_FILE: MSMg01no180_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:53 2005
         (244 letters)



>mm_chr2_75829618_75830261
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagacaagtggaaggactggttttcctccgaaagcaaaatgtggccggccatgctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 ccaagacaagtggaaggactggttttcctccgaaagcaaaatgtgggtggccatgctcaa 260

                                                                       
Query: 61  cacacagactgacatggagtgatgtagctctgaatgccgtggatgggtccctgccgagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacagactgacatggagtgatgtagctctgaatgccgtggatgggtccctgccgagtg 320

                                                                       
Query: 121 ttcctctgggtgtgtgtgggagaggacaggtcttcatgggagcctgctgacaggactctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctctgggtgtgtgtgggagaggacaggtcttcatgggagcctgctgacaggactctg 380

                                                                       
Query: 181 ttcttctcccgcagacctgtccctgtatctggttggcttggctgcaagccctcttaactt 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctctcccgcagacctgtccctgtatctggttggcttggctgcaagccctcttaactt 440

               
Query: 241 tccc 244
           ||||
Sbjct: 441 tccc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)