BAC Information

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BAC

Clone NameMSMg01-180N11
Chromosome2 (Build37)
Map Location 69,819,002 - 69,930,806
singlet/doubletdoublet
Overlap geneMyo3b
Upstream geneLass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650
Downstream geneLOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180N11.T7 (MSMg01no180_n11.b1)MSMg01-180N11.TJ (MSMg01no180_n11.g1)
ACCAG374203AG374204
length720741
length of high quality
(start - end)
311 (40 - 350)282 (70 - 351)
definitionCHROMAT_FILE: MSMg01no180_n11.b1 PHD_FILE: MSMg01no180_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:11 2005CHROMAT_FILE: MSMg01no180_n11.g1 PHD_FILE: MSMg01no180_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,930,500 - 69,930,806)(69,819,002 - 69,819,279)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACCTTACACCCTGACACAAAACCAACCTTTCCCTCCTCAGGTATTTTGTT
ACAGCAAGATGAACCAATGCAAAAACCATGAAAACTAACTAAATAAATAA
ATAAAATAAAAGAGTAATTATCTTATTGTTTATATTGTAAGAATCTTAAA
AGAATCACAAATCTAAACTTTTTAATAAAAATCAATCAAAGCAACCTTAC
ATTCTCAGAATGCATATCTACTCATCAGCGATTCTTTTAAAAAAATCATA
TCAGGAAGCTGAGGGCAAAAACGGGTATAAGAAATCAATCATCACTAGTC
CTTTCTCACCGACACCACGTCAGCTAGTGCTGCCCTACGTGGTCCTCGGG
GTCATGTCACTCTGAAAATCACCCGTGTGACTGTGGTAACCAGTGGACTG
CATTCCATGAGTTCTAAAGCCAGGCGTTGTTTGTGTTGTTCCTCCTGTGT
GGCCCTCTGCACAGCCACCAAGGTCTATTCCCTTATTTGGCCACTTCCTT
ATGTCTGACTAATACTCCAAGGTCCAGTAATCGAAATTCACTGTTTGGCT
ACCACTGCCTCACATGTCCTATTCCTGTTAGCTCAGACTTCCCCTTTGCC
CCTTTAACAACCGCTCCTGCACACCTTATTGTTGCCTGTTTTTGCCCCCT
TTTTAATCCCCCCCCCTGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTTGAATATTAAAAGAATTAATACCAAGTC
TTCTGAAATGTCCACCATAAAGAGGAAGGAACATTTTCAAAATTACCGTG
TGAGGTTAGTATTCCCTTCATACTAAGCAGTAGAATGCATTACCAAGTGT
AGATGCAGAAACCTTCATTAAGATTCTGGTGACTGAATTTGGTAGTGTAG
TAGGGGGCACAGTGTGCTGTCTAACAGAGCATCCTCTTGGCTCTGCTTTA
TCCCACAGCTAAGTCTCTCCAACAGCCAGACGCGCCACACACACCTGTTC
CTTTCTTATGCACCACCCCCTCCCATGCAGATGCAGTTTTAAAAATTACC
ATTTTTACCCCAGCGAAACATTTAAAAAATACATACATTGTGGTGCAGTG
TTGTTCCAGAACATATATGCCCTGTGTGATTATGATGTGTCTTGTGTCTG
CCTTTCCTTTATCCTTCTCTTTTCTTTCTTTTTCTATCTTACACCCTTCC
CTTTATCTTTCCCTCCACTTTTTTTAACTATTTTTTCTCTCCTCTTCTAT
ATCTCTTTTTTTCCACATCCTGTTTCAGTGCTTTCCTTCCTTTTTTACCT
CTCTCTTACCCCCATACCATCTTTTTCCTCGATACTTCGTTTATCCCGCT
ACTATTTTCATTTCACCCCCCTCCCTCTGTTTGCTTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_n11.b1 MSMg01no180_n11.b1 CHROMAT_FILE:
MSMg01no180_n11.b1 PHD_FILE: MSMg01no180_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:11 2005
         (311 letters)



>mm_chr2_69930493_69931203
          Length = 711

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccttacaccctgacacaaaaccaacctttccctcctcaggtattttgttaca 64
           ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaattccacctcagaccctgaaacaaaaccaacctttccctcctcaggtattttgttaca 255

                                                                       
Query: 65  gcaagatgaaccaatgcaaaaaccatgaaaactaactaaataaataaataaaataaaaga 124
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gcaagaggaactaatgcaaaaaccatgaaaactaactaaataaataaataaaataaaaga 195

                                                                       
Query: 125 gtaattatcttattgtttatattgtaagaatcttaaaagaatcacaaatctaaacttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gtaattatcttattgtttatattgtaagaatcttaaaagaatcacaaatctaaacttttt 135

                                                                       
Query: 185 aataaaaatcaatcaaagcaaccttacattctcagaatgcatatctactcatcagcgatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aataaaaatcaatcaaagcaaccttacattctcagaatgcatatctactcatcagcgatt 75

                                                                       
Query: 245 cttttaaaaaaatcatatcaggaagctgagggcaaaaacgggtataagaaatcaatcatc 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  ctttttaaaaaatcatatcaggaagctgagggcaaaaacgggtataagaaatcaatcatc 15

                  
Query: 305 actagtc 311
           |||||||
Sbjct: 14  actagtc 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no180_n11.g1 MSMg01no180_n11.g1 CHROMAT_FILE:
MSMg01no180_n11.g1 PHD_FILE: MSMg01no180_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:11 2005
         (282 letters)



>mm_chr2_69818802_69819483
          Length = 682

 Score =  507 bits (262), Expect = e-148
 Identities = 274/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgaatattaaaagaattaataccaagtcttctgaaatgtccaccataaagaggaagg 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 201 tgttgaatattaaaagaattaataccaagtcttctgaaatgtccaaaataaagaggaagg 260

                                                                       
Query: 61  aacattttcaaaattaccgtgtgaggttagtattcccttcatactaagcagtagaatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacattttcaaaattaccgtgtgaggttagtattcccttcatactaagcagtagaatgca 320

                                                                       
Query: 121 ttaccaagtgtagatgcagaaaccttcattaagattctggtgactgaatttggtagtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccaagtgtagatgcagaaaccttcattaagattctggtgactgaatttggtagtgta 380

                                                                       
Query: 181 gtagggggcacagtgtgctgtctaacagagcatcctcttggctctgctttatcccacagc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaggtggcacagtgtgctgtctaacagagcatcctcttggctctgctttatcccacagc 440

                                                 
Query: 241 taagtctctccaacagccagacgcgccacacacacctg 278
           |||||||| |||||||||||||||||||||||||||||
Sbjct: 441 taagtctccccaacagccagacgcgccacacacacctg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)