BAC Information

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BAC

Clone NameMSMg01-181A22
Chromosome2 (Build37)
Map Location 145,353,466 - 145,353,765
singlet/doubletsinglet
Overlap geneSlc24a3
Upstream genePolr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, LOC627312
Downstream geneOTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181A22.T7 (MSMg01no181_a22.b1)MSMg01-181A22.TJ (MSMg01no181_a22.g1)
ACCAG374355AG374356
length735738
length of high quality
(start - end)
318 (40 - 357)304 (71 - 374)
definitionCHROMAT_FILE: MSMg01no181_a22.b1 PHD_FILE: MSMg01no181_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:27 2005CHROMAT_FILE: MSMg01no181_a22.g1 PHD_FILE: MSMg01no181_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CATAGTAATCTCGTACAAGTATTATGTAATGTCTTTTATGACCCTTTCTC
AATCTCTTCTCTTCCTCTTCTCTTCCTCTTCTCTTCTCTTCTCTTCTCTT
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT
CTCTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGAGAGAGAGACTGGCGAT
GAGCTCCTGGGGTCATACATGTGCTACTATTTACCCATGTTCCACTGTTG
AGCTATATATCTGACCTTTTGCCTTGTCTTTGACTTTTCATTTTGAAGTA
GAGCTCTCATTAAGCAGCCAACTTTGGACTGAAACCCACTCTGTAGTCCA
GGCAAATTTTAACTTGTGATCCTTCTACTCAGCCTCCTTAGTATCTGATA
CTTTGTCATTCATTCATTTATTTCTTCAGGAAATAATCATTAAAGCATGA
GTTCAATTTTGAGGACACAGACCGCCTCTTCATTCTCGGGAAGATGAGGA
GATGGTAATTTAGCAAGAAGAACAGACGCCAGACCATTAATTACATTGAT
TTACTTAAATATGATCAGGCAAGTTACCATCATTAAAAGGGGAGAGAAAT
GTGAGAACCAGTACAAGTGGTCAGAATCACCTGAA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTGGTGTTATTCAGTCATCCAGGTGAGG
GTGAAGGAGGCAACCATGCCCACAATTCCCTGTCAACCTGCTTATGCCCC
CTGCTTCCCATGGGTTTCACGATTAGAAAACTATTGATCTGTGAACAAGT
GTTGGGATGGCTGTCATATGCCTGGCAGCTTAGGGTGTGAGGCTGCTTAT
CTAAATGGACTCACTGGAAAAACTAGAGAAAGAACTTGACATTTCTATGC
CACTGGCTGGACCCTGCAACCCCAAAGCCTTCTGACTCACTAGTGTGGTG
AGATTATTGAATCTTTTTTGACCCTCCGCCCCCTCTCTTTGGAAAATAGT
GTTGCCTTCAGAGTTATTTGAGGACAAAAAGCAAAATCGTGAATCTATCT
AAAGATGCATGAGCAGTGCCCAGTGCATGGGCATCCTGTGCTTGTTCCAT
GGGATGAGGTTCTGGAGTAATTATAAAAGAGGAGACCAGATGAGCATCAG
CACCCCACCCCCTCTGCTTTCTCATCACGAATCCAATATGGCCAACTAGC
CATAGTTCCTTGCCACAATGGACTGTACCCTCAAACTGAGACTCAAGCCC
TTCCTTCCTTGAACTGCTTCTGTTAGGGCATTTTTATGTCCTGTGATGGT
GGAGAGAAGGTTCTGGGATTCCTCTGGATTGGCAGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_a22.g1 MSMg01no181_a22.g1 CHROMAT_FILE:
MSMg01no181_a22.g1 PHD_FILE: MSMg01no181_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:27 2005
         (304 letters)



>mm_chr2_145353266_145353968
          Length = 703

 Score =  567 bits (293), Expect = e-166
 Identities = 299/301 (99%), Gaps = 1/301 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttggtgttattcagtcatccaggtgagggtgaaggaggcaaccatgcccacaattccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acttggtgttattcagtcatccaggtgagggtgaaggaggcaaccatgcccacaattccc 441

                                                                       
Query: 61  tgtcaacctgcttatgccccctgcttcccatgggtttcacgattagaaaactattgatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtcaacctgcttatgccccctgcttcccatgggtttcacgattagaaaactattgatct 381

                                                                       
Query: 121 gtgaacaagtgttgggatggctgtcatatgcctggcagcttagggtgtgaggctgcttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgaacaagtgttgggatggctgtcatatgcctggcagcttagggtgtgaggctgcttat 321

                                                                       
Query: 181 ctaaatggactcactggaaaaactagagaaagaacttgacatttctatgccactggctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctaaatggactcactggaaaaactagagaaagaacttgacatttctatgccactggctgg 261

                                                                       
Query: 241 accctgcaaccccaaagccttctgactcactagtgtggtgagattattgaatcttttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 260 accctgcaaccccaaagccttctgactcactagtgtggtgagattattgaa-catttttg 202

            
Query: 301 a 301
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 703
Length adjustment: 9
Effective length of query: 295
Effective length of database: 694
Effective search space:   204730
Effective search space used:   204730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)