BAC Information

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BAC

Clone NameMSMg01-181C03
Chromosome2 (Build37)
Map Location 26,812,629 - 26,813,257
singlet/doubletsinglet
Overlap geneRexo4
Upstream geneCamsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711
Downstream geneAdamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181C03.T7 (MSMg01no181_c03.b1)MSMg01-181C03.TJ (MSMg01no181_c03.g1)
ACCAG374404AG374405
length725724
length of high quality
(start - end)		669 (45 - 713)630 (75 - 704)
definitionCHROMAT_FILE: MSMg01no181_c03.b1 PHD_FILE: MSMg01no181_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:32 2005CHROMAT_FILE: MSMg01no181_c03.g1 PHD_FILE: MSMg01no181_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCCACACTTTTATCATGAATGGGTGTTGGATCTTGTCA
AATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTTTATAATGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATCCATGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTA
ATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATC
GATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTT
TCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGT
AGAGTACCTTCTACTTCTATTTAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAATTGGACATAGTACTACCGGAGAATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATACCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGTACCTGGAGGGCA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGACATTGAACCCAGATCCTCTGGA
AGGGATCCAGAGCAGCCGGTGCTCTCAACTGCTAAGCCTTCTCTCCAGCC
CCAGAGATTCTAATGCCAGACATCAGAGCCTTGCCGGGTACACCAGGAGT
TACACAATGTAAACAGATCTTGTTTAATCCTTTGAGGAATAGGCTTTTGT
GGGTAGCAGAGCTAAGTGTTAGGGGGTTGGGAGCAGATTCCAGGGGAGCA
GTGGATATGCATTCAGGGACTTCTCCACGGCTCCTCAGCATCCCAAGTTT
CTGAGTTGAATGTTGCTGCCGCTTCAGCTATCCCTATAGGAAGGGAACTG
AATGGGCACGTGCTTCCTCAGGGTGTCATTCCAGCTAGTCACCTCCTTTA
GAGGCCAGCCACAGCCAGCCAGTTAGGTGACTGAGCTCAGAGGACTCTAC
CGAGTGCTAGGGCATGTGACAGTGGACCTTGTCCTTCCTGGATGTGATCT
GTAGTGCCACTGTATTCATGTGTTTCAGGAACCTCTAGATGGGAGTTTAA
TTCTCATTCAATTATTTGGGGCTAGAGATGTATGTAGCTCAGTGGCAGAA
TGCGTGCTTCGTGTGTGAAGGCCCAGGGTTTCGTCCCAGCACCAAAAAAA
GAATATAACAAATGTTCCAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_c03.g1 MSMg01no181_c03.g1 CHROMAT_FILE:
MSMg01no181_c03.g1 PHD_FILE: MSMg01no181_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:32 2005
         (630 letters)



>mm_chr2_26812437_26813466
          Length = 1030

 Score = 1201 bits (621), Expect = 0.0
 Identities = 627/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacattgaacccagatcctctggaagggatccagagcagccggtgctctcaactgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 aggacattgaacccagatcctctggaagggatccagagcagccggtgctctcaactgcta 762

                                                                       
Query: 61  agccttctctccagccccagagattctaatgccagacatcagagccttgccgggtacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agccttctctccagccccagagattctaatgccagacatcagagccttgccgggtacacc 702

                                                                       
Query: 121 aggagttacacaatgtaaacagatcttgtttaatcctttgaggaataggcttttgtgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aggagttacacaatgtaaacagatcttgtttaatcctttgaggaataggcttttgtgggt 642

                                                                       
Query: 181 agcagagctaagtgttagggggttgggagcagattccaggggagcagtggatatgcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agcagagctaagtgttagggggttgggagcagattccaggggagcagtggatatgcattc 582

                                                                       
Query: 241 agggacttctccacggctcctcagcatcccaagtttctgagttgaatgttgctgccgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agggacttctccacggctcctcagcatcccaagtttctgagttgaatgttgctgccgctt 522

                                                                       
Query: 301 cagctatccctataggaagggaactgaatgggcacgtgcttcctcagggtgtcattccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cagctatccctataggaagggaactgaatgggcacgtgcttcctcagggtgtcattccag 462

                                                                       
Query: 361 ctagtcacctcctttagaggccagccacagccagccagttaggtgactgagctcagagga 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 461 ctagtcacctcctttagaggccagccacagccagccagttaggtaactgagctcagagga 402

                                                                       
Query: 421 ctctaccgagtgctagggcatgtgacagtggaccttgtccttcctggatgtgatctgtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctctaccgagtgctagggcatgtgacagtggaccttgtccttcctggatgtgatctgtag 342

                                                                       
Query: 481 tgccactgtattcatgtgtttcaggaacctctagatgggagtttaattctcattcaatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgccactgtattcatgtgtttcaggaacctctagatgggagtttaattctcattcaatta 282

                                                                       
Query: 541 tttggggctagagatgtatgtagctcagtggcagaatgcgtgcttcgtgtgtgaaggccc 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 281 tttggggctagagatgtatgtagctcagtggcagaatgcgtgcttcgtgtgtaaaggccc 222

                                        
Query: 601 agggtttcgtcccagcaccaaaaaaagaa 629
           |||||||||||||||||||||||||||||
Sbjct: 221 agggtttcgtcccagcaccaaaaaaagaa 193


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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