BAC Information

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BAC

Clone NameMSMg01-181M24
Chromosome2 (Build37)
Map Location 155,046,882 - 155,213,895
singlet/doubletdoublet
Overlap geneItch, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2
Upstream geneBC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, LOC100043877, LOC668931
Downstream geneNcoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181M24.T7 (MSMg01no181_m24.b1)MSMg01-181M24.TJ (MSMg01no181_m24.g1)
ACCAG374876AG374877
length717720
length of high quality
(start - end)		674 (44 - 717)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no181_m24.b1 PHD_FILE: MSMg01no181_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:22 2005CHROMAT_FILE: MSMg01no181_m24.g1 PHD_FILE: MSMg01no181_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,046,882 - 155,047,552)(155,213,605 - 155,213,895)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGCGGAA
TTCAGTCTGCTGTCACGCATATTTGGATTTTAACCATTATAGGCATGTGG
CATTTAGTGCTAATAAGTGGGTTAACAGGGCTGTGAAGGCTTCCCTGTCC
TCCAGCGGCTGCTGTGTGCTCACTAAACACACACTTGTAACCTCCAGCTC
CTCGTGACAGTCTTCTTTTTGTCTCTGGGACTTTGGCAAAGTCAAGTACT
TTTTACCTATGGAATCAGATCCTTCTCTCAACTGGCTTATTGTACTGAAT
GTAATGTGTTACAGTATATATCACAGTGTTCTCTTTTATTGAGTCATCTC
GTTGTTGAATATGGCCTTAGGGAACAAACTCATTTCTGTTAGGCTGATAG
TTTGTTGAGCCACATCCCCAGCCCCTCTACTACTATTTTATTCTTAATTG
ACACAAAATAATTTTATATGTTTATGTGACTTGGTTTTTGAAACAAGGTC
TCAAGAAGCCTAGGGTAGCTTTGAACTCCTGGTCATCCTTCCTCTAATGT
CCACATCCTGGAATTATGCTCATGGAGTTACCAAGCCCAACTTAAAAAAT
AATAATGTGTGGTCCTGGAGAGATCCTTGCAGAGGGCCTAAGTTCAGTTC
CCAGCACACACATGATAGCTTACAACCGTCTGTAACTCCAGATCCAGGAG
ATCTGGTTCACTCTTCT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTACTCCAGATATTGAATTAGAAAGGG
GGGAGGGATTATAGGGCACTCACAAAGAGCCCTGTGGGAGAACATTAAGA
AGACTCTTGAAGGCCCTGAATCTCTGTAAGAAAAATTTGGGAATTGGGAC
AGTGAGGCTCCTGGCCTCCTCTACCCAGGAGTGTTTATTATCCAGCCATA
TTGAACAAAGTATGAAATATAAGGCCAGAGGCAAGATAAAGGCAGAGCTG
TCAGTCTGGGGATGGCTTTACCTCATAGTTGTCCTCCTTAGCATCATGCC
TCCTCATTCTTGCCTTGTTGTGCGCCCCCCTTTCCCTGCCTGGAAATCCT
CTGGCCTGCATCTCTCCTAAGCTAATTCTAACACCTTGGGCATATGAACA
GAGATGGTCAGGATGATGGGGCCTTACCCAGCTTCTACTCCTGGGGTGGC
ATGACAAGGTAAGGTGACAAGGTACAAGCCCTTCGGACTCCAGACTCACA
GGGACAGGGGTGGGTAGGGGTTACTCCTGAAGGACAAATTTCAGGGAGGG
GGGAACCCTGGAAGGCAGGATTATAGGAAAAGGAAATGGGGGCATACTCC
ATGCTCACGCCTATAGACAGGGCTTATCTACTCTGACCAAGCATCTTATC
ATGCTCCTTAGATGTCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_m24.b1 MSMg01no181_m24.b1 CHROMAT_FILE:
MSMg01no181_m24.b1 PHD_FILE: MSMg01no181_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:22 2005
         (674 letters)



>mm_chr2_155046679_155047752
          Length = 1074

 Score = 1290 bits (667), Expect = 0.0
 Identities = 670/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtctgctgtcacgcatatttggattttaaccattataggcatgtggcattta 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtctgctgtcaagcatatttggattttaaccattataggcatgtggcattta 263

                                                                       
Query: 64  gtgctaataagtgggttaacagggctgtgaaggcttccctgtcctccagcggctgctgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgctaataagtgggttaacagggctgtgaaggcttccctgtcctccagcggctgctgtg 323

                                                                       
Query: 124 tgctcactaaacacacacttgtaacctccagctcctcgtgacagtcttctttttgtctct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgctcactaaacacacacttgtaacctccagctcctcgtgacagtcttctttttgtctct 383

                                                                       
Query: 184 gggactttggcaaagtcaagtactttttacctatggaatcagatccttctctcaactggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggactttggcaaagtcaagtactttttacctatggaatcagatccttctctcaactggc 443

                                                                       
Query: 244 ttattgtactgaatgtaatgtgttacagtatatatcacagtgttctcttttattgagtca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttattgtactgaatgtaatgtgttacagtatatatcacagtgttctcttttattgagtca 503

                                                                       
Query: 304 tctcgttgttgaatatggccttagggaacaaactcatttctgttaggctgatagtttgtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctcgttgttgaatatggccttagggaacaaactcatttctgttaggctgatagtttgtt 563

                                                                       
Query: 364 gagccacatccccagcccctctactactattttattcttaattgacacaaaataatttta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagccacatccccagcccctctactactattttattcttaattgacacaaaataatttta 623

                                                                       
Query: 424 tatgtttatgtgacttggtttttgaaacaaggtctcaagaagcctagggtagctttgaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatgtttatgtgacttggtttttgaaacaaggtctcaagaagcctagggtagctttgaac 683

                                                                       
Query: 484 tcctggtcatccttcctctaatgtccacatcctggaattatgctcatggagttaccaagc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcctggtcatccttcctctaatgtccacatcctggaattatgctcatggagttaccaagc 743

                                                                       
Query: 544 ccaacttaaaaaataataatgtgtggtcctggagagatccttgcagagggcctaagttca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccaacttaaaaaataataatgtgtggtcctggagagatccttgcagagggcctaagttca 803

                                                                       
Query: 604 gttcccagcacacacatgatagcttacaaccgtctgtaactccagatccaggagatctgg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gttcccagcacacacatgatagcttacaaccgtctgtaactccagatccaggagatctgg 863

                      
Query: 664 ttcactcttct 674
           |||||||||||
Sbjct: 864 ttcactcttct 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no181_m24.g1 MSMg01no181_m24.g1 CHROMAT_FILE:
MSMg01no181_m24.g1 PHD_FILE: MSMg01no181_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:22 2005
         (291 letters)



>mm_chr2_155213405_155214095
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttactccagatattgaattagaaaggggggagggattatagggcactcacaaagagccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 491 cttactccagatattgaattagaaaggggggagggattatagggcactcagaaagagccc 432

                                                                       
Query: 61  tgtgggagaacattaagaagactcttgaaggccctgaatctctgtaagaaaaatttggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgtgggagaacattaagaagactcttgaaggccctgaatctctgtaagaaaaatttggga 372

                                                                       
Query: 121 attgggacagtgaggctcctggcctcctctacccaggagtgtttattatccagccatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attgggacagtgaggctcctggcctcctctacccaggagtgtttattatccagccatatt 312

                                                                       
Query: 181 gaacaaagtatgaaatataaggccagaggcaagataaaggcagagctgtcagtctgggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaacaaagtatgaaatataaggccagaggcaagataaaggcagagctgtcagtctgggga 252

                                                              
Query: 241 tggctttacctcatagttgtcctccttagcatcatgcctcctcattcttgc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tggctttacctcatagttgtcctccttagcatcatgcctcctcattcttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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