This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-182C18
Chromosome
2 (Build37)
Map Location
142,494,266 - 142,494,520
singlet/doublet
singlet
Overlap gene
Kif16b
Upstream gene
LOC668913
,
LOC668914
Downstream gene
Snrpb2
,
Otor
,
LOC668915
,
LOC668916
,
Pcsk2
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC668913
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668913
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins
pseudo
: _no_value
name
LOC668914
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668914
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins
pseudo
: _no_value
name
Kif16b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16558
MGI:1098240
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Snrpb2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20639
MGI:104805
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Otor
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:57329
MGI:1888678
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC668915
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668915
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
LOC668916
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668916
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 14 Proteins
pseudo
: _no_value
name
Pcsk2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18549
MGI:97512
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Kif16b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124487286
GeneID:16558
MGI:1098240
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: kinesin family member 16B
transcript_id
: NM_001081133.1
name
Snrpb2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142353628
GeneID:20639
MGI:104805
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: U2 small nuclear ribonucleoprotein B
transcript_id
: NM_021335.3
name
Otor
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:50400075
GeneID:57329
MGI:1888678
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: otoraplin
transcript_id
: NM_020595.2
name
Pcsk2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:37360981
GeneID:18549
MGI:97512
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: proprotein convertase subtilisin/kexin type 2
transcript_id
: NM_008792.3
name
Kif16b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124487287
GeneID:16558
MGI:1098240
definition
GO_component
: GO:0005871 - kinesin complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]
GO_function
: GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007017 - microtubule-based process [Evidence IEA]
codon_start
: 1
note
: kinesin 16B; N-3 kinesin
product
: kinesin family member 16B
protein_id
: NP_001074602.1
name
Snrpb2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:23956110
CCDS:CCDS16808.1
GeneID:20639
MGI:104805
definition
GO_component
: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA]
GO_function
: GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO_process
: GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]
codon_start
: 1
product
: U2 small nuclear ribonucleoprotein B
protein_id
: NP_067310.1
name
Otor
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:10181138
CCDS:CCDS16809.1
GeneID:57329
MGI:1888678
definition
GO_component
: GO:0005576 - extracellular region [Evidence ISS]; GO:0005794 - Golgi apparatus [Evidence ISS]
GO_process
: GO:0001502 - cartilage condensation [Evidence IMP]
codon_start
: 1
product
: otoraplin
protein_id
: NP_065620.1
name
Pcsk2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6679229
CCDS:CCDS16810.1
GeneID:18549
MGI:97512
definition
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004286 - proprotein convertase 2 activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO:0004289 - subtilase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0016486 - peptide hormone processing [Evidence IMP]; GO:0006508 - proteolysis [Evidence IMP]
codon_start
: 1
note
: prohormone convertase 2; proprotein convertase 2
product
: proprotein convertase subtilisin/kexin type 2
protein_id
: NP_032818.1
name
LOC668913
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668913
definition
number
: 1
pseudo
: _no_value
name
LOC668915
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668915
definition
number
: 3
pseudo
: _no_value
name
LOC668915
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668915
definition
number
: 2
pseudo
: _no_value
name
LOC668915
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668915
definition
number
: 1
pseudo
: _no_value
name
LOC668914
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149250178
GeneID:668914
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins
product
: similar to RNA binding motif protein, X-linked 2
pseudo
: _no_value
transcript_id
: XR_034955.1
name
LOC668916
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149250027
GeneID:668916
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 14 Proteins
product
: similar to Ac2-008
pseudo
: _no_value
transcript_id
: XR_034659.1
clone name
MSMg01-393F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337G22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426B03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-085N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-464H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-141B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-175G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-135G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-189I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-327G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-218L14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272C10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-211I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440L01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-312L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-425I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-347I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-135I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-188K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-433G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426F19
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-162G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-049A19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474E18
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-318I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-175K21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-277M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417E11
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-122M14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-367K19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519P01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-411K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-488H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-152H12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-303C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-183B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-312F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154I10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-153H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-117M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363P21
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-194A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-180C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-491P18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-445K14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508A20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-081M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-069L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-441L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-418I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-506I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-412G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-302J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-368E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-466C10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-204P14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-305M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-155J02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-343L16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-230F07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-079E14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-079E16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-140J14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-051A08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-106F06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-344K15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-016C24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-172D16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-186J19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-173J08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008C06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-097F18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-212O02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-075L03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-330B16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-275P20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-255H14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-193A06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-012J01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159N04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-229K03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-041P20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-143G07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-238E17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-323I12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-125H04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-164K15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-329H15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-089K14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-104N14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-289K13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-023C19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-247P12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-192F14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203J08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-233E18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-188P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-057M12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-222N08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-333C13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-186A08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-147E04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-305C19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-166D01
singlet/doublet
doublet
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B6Ng01-121C24
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B6Ng01-133O02
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doublet
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doublet
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B6Ng01-214F02
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B6Ng01-058G21
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B6Ng01-322J13
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B6Ng01-124J19
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B6Ng01-149P08
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B6Ng01-218C03
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B6Ng01-323K07
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B6Ng01-050N16
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B6Ng01-267G01
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