BAC Information

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BAC

Clone NameMSMg01-182C18
Chromosome2 (Build37)
Map Location 142,494,266 - 142,494,520
singlet/doubletsinglet
Overlap geneKif16b
Upstream geneLOC668913, LOC668914
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182C18.T7 (MSMg01no182_c18.b1)MSMg01-182C18.TJ (MSMg01no182_c18.g1)
ACCAG375131AG375132
length735764
length of high quality
(start - end)
267 (47 - 313)75 (105 - 179)
definitionCHROMAT_FILE: MSMg01no182_c18.b1 PHD_FILE: MSMg01no182_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:50 2005CHROMAT_FILE: MSMg01no182_c18.g1 PHD_FILE: MSMg01no182_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAAAGAGGA
TCCGCGGAATTCAAAATACATGGAATCTGTAATACACTCGCTAAGATAAT
CTTTTGACACCTTAAAACTTCAGTTTTAGTTACAGCCTGTAATCTTTTGG
AACTTTGTCTAAAATTACATCCTGTTCTTTCACATTCCCTTCTGGAGTAT
GTTCTCTTGGGCACAGACTCCAAAATAGTTGGATGTGACAGTTCCTTTTA
TGGAGATTTTGATGAGGTTGTTTCAGTGCTTCTTTTTGGTTTCAAATAAT
AGATCCTAAGGCCGTGCTTTATAGATTGAGGAAGGAAAACCAAACCCAAG
TTTGCCTGGTTTTGGCACAGGAGACGATCTAATCTATCATCGCATGATAT
ATTAATTGTGATTCCCCATCCCCCCAAAAAAAAAAAATTGATTAATATCT
TTTCCTGTTTCTCCACTATTATACTAATCGATATAATGTTTTTATAAATA
AACCTCAAAACCTTAACCTTGTTTTCCTATTTTACTCTTTTCAAACAACT
TATATTTATATTTCTATATCCCCTTATCAACTTTTTTCTCTGCAATTCAT
AACATTCTTAAATATACATAACAATAAATTATTTTCGAGATACCTCCTTT
ATATCCTTTTCTCGTTTATATCTCTTCCTTATGTTCCTCTTTTTCTTGCT
TTATAATTTAATACACTCATCCTTATTTTCTCATC
CAACAGGAGAGCTGAAAACGGCTGTTCGGCGAATTTAAGGGAACTATAGA
AGTATCCACGACAAACACCCTCACAAGGGTAGACAAATGGCTCACCACTT
AAGAATGCTTCCCAGTCACCCAGAGGACCAGACATCAGTTCCCCAGTACC
CATGTCAGGTGGCCCACCACCATCCGTACTACCAGCTTCAGGAGATCTGA
CTCCTTGATTCATCTATAAGCCATAAACCCATATTGAGCTGCATGCACGA
GCCCACCTTCCCTGCGCACCAGAAACACAAAAACACAACAAGGGGACGGG
GCAAGGCCACACCCCCAGCCGAGACCCCACGNCAGCCCAACACAGCCGCA
AAAAGACAGCCCAAGAAGGGGAAAAAACGGGGGAAAAAGGGGGAGGAAAA
GGGGAACACGGGGGGGGAAAGGGGGGCGAAAAGGGGGAAGGGGGGGGGAA
AAAAAAGGGAAAGGGAAATGGAAAGGGGGGGGAAAAAAAAAAAAAAAAAA
AAAGGGGGGGCAAACAAAAAAGGGGGAAAAAAAAAAATACAACAGGGGAA
AAAAAAAAAATGGGGGGAAAAAAAAAAAGGGGGAGAAAAACCGCCACTTG
TGAAACAATGGGGGTGAAAAAAAAAAAACCGGGAGGGGGGGGAAAAAAAG
AGGGTGGGGCACGGGGGGGAAAAGGAGAAAAAACAAGGCGGCCAAGGGGG
GGAACAAGGGGACACAAGGAAAAAACAAGGGGGGTGGGGAACAAAAAAAA
GGAAGAAGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_c18.b1 MSMg01no182_c18.b1 CHROMAT_FILE:
MSMg01no182_c18.b1 PHD_FILE: MSMg01no182_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:50 2005
         (267 letters)



>mm_chr2_142494057_142494723
          Length = 667

 Score =  485 bits (251), Expect = e-142
 Identities = 254/255 (99%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaattcaaaatacatggaatctgtaatacactcgctaagataatcttttgacaccttaa 69
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggaattcaaaatatatggaatctgtaatacactcgctaagataatcttttgacaccttaa 405

                                                                       
Query: 70  aacttcagttttagttacagcctgtaatcttttggaactttgtctaaaattacatcctgt 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aacttcagttttagttacagcctgtaatcttttggaactttgtctaaaattacatcctgt 345

                                                                       
Query: 130 tctttcacattcccttctggagtatgttctcttgggcacagactccaaaatagttggatg 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tctttcacattcccttctggagtatgttctcttgggcacagactccaaaatagttggatg 285

                                                                       
Query: 190 tgacagttccttttatggagattttgatgaggttgtttcagtgcttctttttggtttcaa 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgacagttccttttatggagattttgatgaggttgtttcagtgcttctttttggtttcaa 225

                          
Query: 250 ataatagatcctaag 264
           |||||||||||||||
Sbjct: 224 ataatagatcctaag 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)