BAC Information

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BAC

Clone NameMSMg01-182D02
Chromosome2 (Build37)
Map Location 90,333,029 - 90,333,490
singlet/doubletsinglet
Overlap genePtprj
Upstream geneOlfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, 4933423P22Rik
Downstream geneNup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182D02.T7 (MSMg01no182_d02.b1)MSMg01-182D02.TJ (MSMg01no182_d02.g1)
ACCAG375145AG375146
length713800
length of high quality
(start - end)
462 (75 - 536)159 (68 - 226)
definitionCHROMAT_FILE: MSMg01no182_d02.b1 PHD_FILE: MSMg01no182_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:52 2005CHROMAT_FILE: MSMg01no182_d02.g1 PHD_FILE: MSMg01no182_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCATTCTGCCTAACTACACACTTG
AACGTGTTAGCCTACATGTCCCCACACCCCACACTACCCTTTCACCCCGT
GGATTTGATTTGTTTTCATTATATTTTGTGTGTTCCCTGAGTATGTGTGT
GGTGTGCATGTGTGTGTGTATACATGCTCATTGGTATGTGGCATATATAG
GTGTGTGTGGATAGAGGGCAGAAGTTAAGTTTCTATCTTCGTTGATCTTC
TGGTATACTGAGGCACGGTTTCTCACTTGACCCAAGGGATGCCCCTGAGG
CATCTCCTCAGCTTTTGACTTGTTTTTAGATTCTATGTGCAGCCAGACAG
TCACTGTGTAGTGATGGAACGCTGTCTAGCTGTGGTCCTGTAAGATGAAG
TTGACTGGAAAGCATTACAGGTAGCCTTATACTGGCTATGTGACCTCCTG
TGAGTCTTGTGTTTACCCTGTTTCTTGTATTGAGAGGCCACATTGTGACC
TACATCATCTACATTTGCGTGAAGGACACTTTATGGTGTCTTCACAACTG
TGAAAAGCCTAACATTCTTGTTTTTACAATGCACTCTTACCTTTTATGTA
CCACGCCGACTGTTATTGTTCCATTGTCCACCCTTTCTTTTTCTCCCACT
CTTCTGCCTCTCC
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGAC
CCTAAAAATTCCACCAGAGAACTCCTAAACCTGATGAACAGCTTCGGTGA
AGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACA
CAAAGAATAAACAGGCTGAGAAAGNAAACTTAAGTGGTAAATACATACAT
CTCCCTTTCCTCAATAGGCCACCAATAATATTAAAATTATCCTTTCCTNC
GGAAAGAAAAACGACATGTTCTTCGACAATACATTCCGTGTTTATAATAT
TTATATAAATCTATGAGTAAAATACCCGCACACCCCCCAAATTATTACTG
CCCTACCAGTATAAATACATTAACACCTTTCCTAAAAAATTTTACCTTCT
TTTTATCTAACCCATGCTTCCATAATAAAATATTATATCTCCATTATATC
ATTACCTCCTAACATCAACCCACAAATTTATACGCCCCGTCCACCAAACC
AACCCAACAAAACAACTGAACTACCAAGATACATACTATCCCCCTATATA
TATCACGCCCCCCATAACTATTACTTCCCTTCTTCAATTTTTCTCCCCCA
CTTATTTATATCTCTTCTATTTTCGTCACCGCCCTTATTATATTTCATAA
AAACCACGTATCTTCATACCTATTTTACTTTAAACCTAAACCCCAACCCC
CCCCCTCTCATATATATCCACTCTTCAGTTTCTTTTTTCTCATGTAAAAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_d02.b1 MSMg01no182_d02.b1 CHROMAT_FILE:
MSMg01no182_d02.b1 PHD_FILE: MSMg01no182_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:52 2005
         (462 letters)



>mm_chr2_90332644_90333505
          Length = 862

 Score =  824 bits (426), Expect = 0.0
 Identities = 453/462 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcattctgcctaactacacacttgaacgtgttagcctacatgtccccacaccccacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 847 attcattctgcctaactacacacttgaacgtgttagcctacatgtccccacgccccacac 788

                                                                       
Query: 61  taccctttcaccccgtggatttgatttgttttcattatattttgtgtgttccctgagtat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 taccctttcaccctgtggatttgatttgttttcattatattttgtgtgttccctgagtat 728

                                                                       
Query: 121 gtgtgtggtgtgcatgtgtgtgtgtatacatgctcattggtatgtggcatatataggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gtgtgtggtgtgcatgtgtgtgtgtatacatgctcattggtatgtggcatatataggtgt 668

                                                                       
Query: 181 gtgtggatagagggcagaagttaagtttctatcttcgttgatcttctggtatactgaggc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 667 gtgtggatagagggcagaagttgagtttctatcttcgttgatcttctggtatactgaggc 608

                                                                       
Query: 241 acggtttctcacttgacccaagggatgcccctgaggcatctcctcagcttttgacttgtt 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 607 acggtttctcacttgacccaagggatgcccctgaggcatctcctcagcctttgacttgtt 548

                                                                       
Query: 301 tttagattctatgtgcagccagacagtcactgtgtagtgatggaacgctgtctagctgtg 360
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 547 tttagattctatgtgcagccagacagtcactgtgcagtgatggaatgctgtctagctgtg 488

                                                                       
Query: 361 gtcctgtaagatgaagttgactggaaagcattacaggtagccttatactggctatgtgac 420
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 487 gtcctgtaagatgaagttgactggaaagcagtacaggtagtcttatactggctatgtgac 428

                                                     
Query: 421 ctcctgtgagtcttgtgtttaccctgtttcttgtattgagag 462
           ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 427 ctcctgtgaatcttgtgtttaccctgtttcttgtattgagag 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)