Query= MSMg01no183_k02.b1 MSMg01no183_k02.b1 CHROMAT_FILE:
MSMg01no183_k02.b1 PHD_FILE: MSMg01no183_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:42 2005
(679 letters)
>mm_chr2_48317663_48318742
Length = 1080
Score = 1237 bits (640), Expect = 0.0
Identities = 667/676 (98%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 5 gaattcattttaaaatactgacatgatgctgactttatgccatgtacttacatttcattg 64
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcattttaaaatattgacatgatgctgactttatggcatgtacttacatttcattg 264
Query: 65 tatctattagaaatgcgagcagaaaataaagtgtttacattatggagtgactacagggag 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatctattagaaatgtgagcagaaaataaagtgtttacattatggagtgactacagggag 324
Query: 125 tgagaacatctcagagttcaaatgatttggaacgtttcttgaaaggtggaaggagttaac 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 tgagaacatctcagagttcaaatgatttggaacgtttcctgaaaggtggaaggagttaac 384
Query: 185 tctagaactccaccccactccctcctcttttttttt-gctatgagtgaaattgttcgtac 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 tctagaactccaccccactccctcctcttttttttttgctatgagtgaaattgttcgtac 444
Query: 244 tttctgaaaaagacattaactaggtcccatgcagtaggcatgtttaatgagagcatggga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctgaaaaagacattaactaggtcccatgcagtaggcatgtttaatgagagcatggga 504
Query: 304 gttcacgtaacgaaactggccttcttccaaattggtgtaaaggaactaacccaatttcag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttcacgtaacgaaactggccttcttccaaattggtgtaaaggaactaacccaatttcag 564
Query: 364 agtttgattcatggtttgaaagaacaacaaatttgtttcatttatcctacgcaattaaat 423
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 aatttgattcatggtttgaaagaacaacaaatttgtttcatttatcctacgtaattaaat 624
Query: 424 taatgagttgagttcaaatgaaacaatttaactcaaaaaattgtgttgactataaattaa 483
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 taatgagttgagttcaaatgaaacaatttaactcaaaaaattgtgttgattataaattaa 684
Query: 484 aagtaataaatttctgcaatgaatttttattggttgactttttctagtttcttatttctc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagtaataaatttctgcaatgaatttttattggttgactttttctagtttcttatttctc 744
Query: 544 atcaaattagaatgttacctgtttttaattggttctactgtattatatatttccttaatt 603
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 745 atcaaattagaatgttacctgtttttaattggttctactgtattgtatatttccttaatt 804
Query: 604 ttttttcttagattcttctgggtcttcactgtatggctgacaatgtattgaacttttata 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttttttcttagattcttctgggtcttcactgtatggctgacaatgtattgaacttttata 864
Query: 664 taattccaatctcttg 679
||||||||||||||||
Sbjct: 865 taattccaatctcttg 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space: 715830
Effective search space used: 715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_k02.g1 MSMg01no183_k02.g1 CHROMAT_FILE:
MSMg01no183_k02.g1 PHD_FILE: MSMg01no183_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:42 2005
(490 letters)
>mm_chr2_48427614_48428503
Length = 890
Score = 897 bits (464), Expect = 0.0
Identities = 485/494 (98%), Gaps = 4/494 (0%)
Strand = Plus / Minus
Query: 1 tcccctaacccttaacatctcaagtttaaaccagaaaaacattatcttggatttcggatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 723 tcccctaacccttaacatctcaagtttaaaccagaaaaacattatcttggatttctgatg 664
Query: 61 tctggtattttgaggtaattaacttattttgttttaagacactaagtttctggtatcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tctggtattttgaggtaattaacttattttgttttaagacactaagtttctggtatcatg 604
Query: 121 aacaccagtgatattaaactaatatacaaagtaggcacagagtgtattactcagtttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aacaccagtgatattaaactaatatacaaagtaggcacagagtgtattactcagtttcct 544
Query: 181 tcctacaaatggattatttaaccaatgagagtcaaatgcatgcttctatactttcagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tcctacaaatggattatttaaccaatgagagtcaaatgcatgcttctatactttcagtaa 484
Query: 241 ataaacagtgtcctgacaaagttattaattttatgaatattccaagctatgtgataacag 300
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 483 ataaacagtgtcctgacaaagttattaattttataaattttccaagctatgtgataacag 424
Query: 301 aagaaggattcttacattgttcctgctgcagctcaagtgtggctgctcagaggaagacca 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aagaaggattcttagattgttcctgctgcagctcaagtgtggctgctcagaggaagacca 364
Query: 361 gcttgaactggagaaagttgtgtagttgtttgaattgcaagttgctt----tttttttat 416
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 363 gcttgaattggagaaagttgtgtagttgtttgaattgcaagttgcttcttttttttttat 304
Query: 417 aagaatgcattttaaattgagtgactgacagactatggttatacaattttaagtatttgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagaatgcattttaaattgagtgactgacagactatggttatacaattttaagtatttgg 244
Query: 477 tagacattttctca 490
||||||||||||||
Sbjct: 243 tagacattttctca 230
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
