Query= MSMg01no183_k14.b1 MSMg01no183_k14.b1 CHROMAT_FILE:
MSMg01no183_k14.b1 PHD_FILE: MSMg01no183_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:44 2005
(517 letters)
>mm_chr2_9392862_9393777
Length = 916
Score = 915 bits (473), Expect = 0.0
Identities = 503/513 (98%), Gaps = 3/513 (0%)
Strand = Plus / Plus
Query: 5 gaattcaacacatcatagctgcgtgtcaggggccttttcttctggctcccattcacttca 64
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacacatcagagcggcgtgtcaggggccttttcttctggctcccattcacttca 264
Query: 65 tttctgtctaataaccgcctttctcaagtcctgaatcactgctgcctcatccttttaaca 124
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctgtctaataat-gcctttctcaagtcctgaatcactgctgcctcatccttttaaca 323
Query: 125 tctacactgtagcttacctttaatcttagaaatgattaaagtatgattgtttcaggagag 184
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 324 tctacactgtagcttacctttaatcttagaaatgattaaagtatggttgttttaggagag 383
Query: 185 ataagtgttagataacttggctttgatataccacttcttttttaattctttttaatttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataagtgttagataacttggctttgatataccacttcttttttaattctttttaatttaa 443
Query: 245 tctgttttacagtccagactttatccccctccctgtataccctctgactgttctacatcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctgttttacagtccagactttatccccctccctgtataccctctgactgttctacatcc 503
Query: 305 catacctccttccctctctatctccatgatggtgtccccaccccctcactcccaccccac 364
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catacctccttccccc-c-atctccatgatggtgtccccaccccctcactcccaccccac 561
Query: 365 caggcttccccactccctgggacctccagtctcttaagggttaagtacatcttctctgac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caggcttccccactccctgggacctccagtctcttaagggttaagtacatcttctctgac 621
Query: 425 tgagtccagaccaggcagtcctctgctgtatatgtgtgggggtcctcatatcaacttgtg 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 622 tgagtccagaccaggcagtcctctgctgtatatgtgtgggggtcctcatatcaactggtg 681
Query: 485 tatgctgcctcgttggtgttgagtatctgagag 517
|||||||||||||||||||||||||||||||||
Sbjct: 682 tatgctgcctcgttggtgttgagtatctgagag 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space: 459342
Effective search space used: 459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_k14.g1 MSMg01no183_k14.g1 CHROMAT_FILE:
MSMg01no183_k14.g1 PHD_FILE: MSMg01no183_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:44 2005
(292 letters)
>mm_chr2_9493079_9493770
Length = 692
Score = 516 bits (267), Expect = e-151
Identities = 285/291 (97%)
Strand = Plus / Minus
Query: 1 attgaaacttaggactacctagcagattgactgactggtacttattgcgcaccatgagct 60
||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct: 491 attgaaacttaggactacctagcaggttgactgactggcacttattgggcaccatgagct 432
Query: 61 tgtcaaacaaatgattgttcatgtaagtatcatttaatctctccaaactgttcccgaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 431 tgtcaaacaaatgattgttcatgtaagtatcatttaatctctccaaactgttcccgagga 372
Query: 121 tgtcttatcagaggtttgaaactctttaccagtgagaaaagaagcaacctgttcttgata 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 371 tgtcttatcagaggtttgaaactctttaccagagagaaaagaagcaacctgttcttgata 312
Query: 181 aagttctgttgacgtcagggtccttccttatcccacaaatccaacaaagtctcctgagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aagttctgttgacgtcagggtccttccttatcccacaaatccaacaaagtctcctgagct 252
Query: 241 ctggaacaagtggccaagaaaagaaggagctgggtataaaatgctttcata 291
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 251 ctggaacaagtggccaagaaaagagggagctgggtataaaatgctttcata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
