BAC Information

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BAC

Clone NameMSMg01-184B01
Chromosome2 (Build37)
Map Location 159,238,509 - 159,238,779
singlet/doubletsinglet
Overlap genenone
Upstream geneB230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689, Gm826, Mafb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184B01.T7 (MSMg01no184_b01.b1)MSMg01-184B01.TJ (MSMg01no184_b01.g1)
ACCAG376464AG376465
length718753
length of high quality
(start - end)
276 (58 - 333)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no184_b01.b1 PHD_FILE: MSMg01no184_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:16 2005CHROMAT_FILE: MSMg01no184_b01.g1 PHD_FILE: MSMg01no184_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAAAANNGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGGCAGCATCTGTGAGGTGCTCACTGGACTTGG
GATTGTAGATCTGTCTTATTGGAGTATATCATTCTTAGACTTACTTCAGA
AATCAAGGTCAGAGTTATGGAGCTCTGGGCTAATCAGAGACAGGGCCAGG
ATTCAACCCAGTTTCCCCAGACTCAGAGTCAATAGATATAGTGTAGCTGG
GCCTTCATGTTTAGGCAGAGATGATCCCAGGGATATTTTTCACTTTCCTA
GAAATCAGTACTGACTAGTGACCTCAAGGGTGTTAACAAGGGTGTGTGGA
AGACAGAGTTGATTGTTTTATTTGACTCCAATGCTAACCACAATAGAAAG
ATCAAGTTGTTGGAATATATTACGACCAAAAATAAAAAAGAAAAAATATC
GGGGGGGGTGACCCGAGTCCGGCACTATTAATGTTCACAGCATGTGACAC
CGCATTATTTTTGCTCCCCCCACTCTCAGTACCATGTCTTTGGCCTCCCC
GCCCCCATTTCCCTAGTTTTCGAAATCTCATCCCGGACTTTGAACAAACT
CACCTGATCTATTCATCTGCATTGTTACCCCTATCCCTTTTTCTACCCCC
CCTTCCGGTATCTCGCCTCCCTTTTTTTTATCCCCCCCTCCTCCAACTTC
TTTGTCCACCCCGATATA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTCCTCCTTCAGTCCTGTTT
TGTTACCAGCTGGAAAGAATTGTCTGATTTTAAAGGAGCTCACGTAATTA
GATTAGGCCAACTCAGATAATCTTTCTATTTTAAAGCCAAACATATGCTG
TGTGATTTTCCCTGGGGAGAGGCGAATAAACATCTATTCACCCCAGTCTG
AACATTGGTGACTGGCCAAAGAAGTATGTACCGAAGTCTAGCTTAGGAAA
TCAGTGAGTTGACTGAAGTTATTTTCAGGAGTATGGATGATTCGAAGGCA
GTTGCAAGTACTTCTCATATGGCCCACCAGCTAGGATTCCCTTTTGCAAA
GGCACCTCCTACATTACCAAATAGCCCATACACTAATGGTAAATGACTAA
ATAAAACTGTATCCCTGAAGCTTCCTTGAATGACTTGCAGTGGCCCAGCC
AATCAGAAAGTTCTCCACAGCAATTGTTACTTTAAGGGTAGGGACAAGGT
CTGGTGAATCTTGTAAGCTTCAGGAGCTTTCCTGAGGTTTGTGAGTTTTA
TTTGCTTCCTGTGTTTTGTAAAATTTATATTATTTCAGGTTCTCAATGAG
ATTTACTCCTGTAATATACTGCCTCAGACTATCCGCTTCACATAAGGACG
TGTTTTGCTTTTTTAAGTACAACGCTTTTTACATATCACTATTCTTCGTT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_b01.b1 MSMg01no184_b01.b1 CHROMAT_FILE:
MSMg01no184_b01.b1 PHD_FILE: MSMg01no184_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:16 2005
         (276 letters)



>mm_chr2_159238305_159238980
          Length = 676

 Score =  509 bits (263), Expect = e-149
 Identities = 269/271 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggcagcatctgtgaggtgctcactggacttgggattgtagatctgtcttattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcaggcagcatctgtgaggtgctcactggacttgggattgtagatctgtcttactg 264

                                                                       
Query: 65  gagtatatcattcttagacttacttcagaaatcaaggtcagagttatggagctctgggct 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 gagtatatcattcttagacttacttcagagatcaaggtcagagttatggagctctgggct 324

                                                                       
Query: 125 aatcagagacagggccaggattcaacccagtttccccagactcagagtcaatagatatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcagagacagggccaggattcaacccagtttccccagactcagagtcaatagatatag 384

                                                                       
Query: 185 tgtagctgggccttcatgtttaggcagagatgatcccagggatatttttcactttcctag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtagctgggccttcatgtttaggcagagatgatcccagggatatttttcactttcctag 444

                                          
Query: 245 aaatcagtactgactagtgacctcaagggtg 275
           |||||||||||||||||||||||||||||||
Sbjct: 445 aaatcagtactgactagtgacctcaagggtg 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)