BAC Information

Click to search

BAC

Clone NameMSMg01-184C24
Chromosome2 (Build37)
Map Location 97,936,351 - 97,936,686
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043267, Lrrc4c, LOC621146, LOC664974
Downstream geneLOC100042886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184C24.T7 (MSMg01no184_c24.b1)MSMg01-184C24.TJ (MSMg01no184_c24.g1)
ACCAG376548AG376549
length730717
length of high quality
(start - end)
317 (64 - 380)336 (382 - 717)
definitionCHROMAT_FILE: MSMg01no184_c24.b1 PHD_FILE: MSMg01no184_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:27 2005CHROMAT_FILE: MSMg01no184_c24.g1 PHD_FILE: MSMg01no184_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATTTTTNNNNAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCTACCAGATTTTTGATGAAGAGCTAATT
CAATACTTCTCAAACTATTCTATAAAATAGAAAGTGGAAAATGCTGCCAC
ACATAGACTCAACAAAGAAAGAGAATTTCAAGCACTTTTTCTCATAGACA
TTGATGCAAAAATACTCAATAAAATACTTACAAACTGAATCCAAGACATT
TCATGTAGGATTCATTTTAGGAATGCAGGATGGTTCAATATATAAAAACC
CATCAACACAATCTGCCACATAAACAAAATGAACAACAACAACAAAAAAA
CCCACATAATAATATCAGTAAATGCTGATATAATTTCCCCNACACCCCCA
ACAACCCTTCTAGATAAAAGTCTTGAAAAGAGAAGGCATACAAAAAAAAT
ACAAAGCTCAACACATTAAAGGTAATATATAGCAAGCCAATAGCTAACAT
CAAATTAGATAATGAAAACCTTAAAGTATTTCCACTAAAATCAGGAACAC
TACAAGGCTGTCTATTCTCCCTATATTTCTTCAATATTGTATTTGAAGTT
CTGGCTAGGGCGATAAGACAATAAAAGGAAATCAAGGGGATATAAATTGG
AAAAGAAGTTAAAATATCGCTATTCACAGATGTTATATACTATACATAAT
GACCCCAAAAAATTCTACCAGAGAACTCCT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTGGCAAAGTTTTGAACTTAC
TTTTACACCCATACTAACAATTTGGCAAGTAGCCAACATTTTCTCTTTGA
AGCATTTAATCATAGGCTCTATAGACATCCTTAGACATACATTAAATTTG
TTTCCTACATTTAATCATTGAAACACTTTAAATAATATATTAGGGAACAG
GAGCTGTTTTATAATATTCATGTATAATGACATAATATAATAATTGAATT
TAAAAGCTACACATATTCATTAATTGACATGAAAATGCATTTAGTACATT
GCTGAATAATGGAGTATGCTATAACACATGATTGTGTTTTTGTGTGTATG
GTAAGAGAGCTGAAGCAATAATGAAAAGCTATCGTTCAGTGTTACTATTT
TAAGTAATTCTCACAATCTTTTGTAGATACTCATATATTGGTAAAGTTTC
TTGAATAAAATTGGTTTAACAATATCAAAAACCTACATCTTTGTGATAAA
TACAAGACAACACTAGTAATTCAGCAATAGTGTATGAATTTCACTATTCA
TTGAGTTGTCTGACTTTCTCATGTATAATCTTCTATTCATTTAATTGCAT
CAGCCATATTCAGTTCTTTTAAAAATTATGAAGATAAAGAGCTAGGATTA
GATATGAATGCTCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_c24.g1 MSMg01no184_c24.g1 CHROMAT_FILE:
MSMg01no184_c24.g1 PHD_FILE: MSMg01no184_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:27 2005
         (336 letters)



>mm_chr2_97936151_97936886
          Length = 736

 Score =  619 bits (320), Expect = 0.0
 Identities = 332/336 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgtttttgtgtgtatggtaagagagctgaagcaataatgaaaagctatcgttcagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttgtgtttttgtgtgtatggtaagagagctgaagcaataatgaaaagctatcgttcagtg 477

                                                                       
Query: 61  ttactattttaagtaattctcacaatcttttgtagatactcatatattggtaaagtttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttactattttaagtaattctcacaatcttttgtagatactcatatattggtaaagtttct 417

                                                                       
Query: 121 tgaataaaattggtttaacaatatcaaaaacctacatctttgtgataaatacaagacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgaataaaattggtttaacaatatcaaaaacctacatctttgtgataaatacaagacaac 357

                                                                       
Query: 181 actagtaattcagcaatagtgtatgaatttcactattcattgagttgtctgactttctca 240
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 356 actagtaattcagcaatagggtatgaatttcactattcattgagttgtctgactttctga 297

                                                                       
Query: 241 tgtataatcttctattcatttaattgcatcagccatattcagttcttttaaaaattatga 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgtataatcttctattaatttaattgcatcagccatattcagttcttttaaaaattatga 237

                                               
Query: 301 agataaagagctaggattagatatgaatgctcatta 336
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 236 agataaagagctaggattaaatatgaatgctcatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)