BAC Information

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BAC

Clone NameMSMg01-184F17
Chromosome2 (Build37)
Map Location 54,259,476 - 54,259,780
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666872, LOC666876, LOC207933, Rprm, LOC666913, LOC626563, LOC100041792
Downstream geneLOC100042878, Galnt13, LOC666936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184F17.T7 (MSMg01no184_f17.b1)MSMg01-184F17.TJ (MSMg01no184_f17.g1)
ACCAG376664AG376665
length768799
length of high quality
(start - end)
309 (58 - 366)240 (78 - 317)
definitionCHROMAT_FILE: MSMg01no184_f17.b1 PHD_FILE: MSMg01no184_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:41 2005CHROMAT_FILE: MSMg01no184_f17.g1 PHD_FILE: MSMg01no184_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGCAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCCACGGAGATGCTTAGTTGACAGATAAATATA
TGTATTGGAGCTCAGGGATGAAATCCAAAGGTAAAGTTGGAAGTAAAATA
CATGTAAATGAGATTTAATCTGCTCCTTAAATTAGAAAAGAAGTTGGTAA
TATTTGGGAAAATCTGACTGACTTTTAAGGACATTTATAATTTAATCTAA
AAACCCAATAGCTAATATTTAGTAAAAACAAGTGAAAATGTGGATTTTTA
CTCTATTTATGATACCTGTAAATAAATTTGCTTATATATGTATGTTTTGA
GTTTTAGGTTTAGGATCTTTTTTTTTTCCCCCCCCCCCCCATTTTTAATC
TTTTACCATATTTTTTTTTTTTCCCCCCCCAAATAAAATAATATTGTTTT
ATGCGGCGCGTCTTTTTTCCCCCACATTAATCCAACATCTTATTTTTCCT
TCATTTTCTCTTCCCCTTTTTTTTTTTCCTGCCTCCTCCTCTTTATACTT
TTTTATCCTTTTTCCTCCTCCCCTCTTTTTTTCATCTCTATCATCCCTAT
TTTCTTTCATACTTACTTATAAATATACTACTTCTTCCTTTATTTATTTA
AAATTATTCTCTCTTTTCCGCATTTTATAATATACTCGTTTCTCCTTATT
TTTCCCCTCTACTTTTTTTTATTCCCCGCCCTACATATCCAATATATTTC
TTTCCCCCTCAAATTTTN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATGGAAAAAAAACAAAACACAC
AAACTGATTGGGGTGCAATGAAGGCAGTTGGAAGAGTCAAGATCCTATGG
CCTAGTCATCCGTCAATGGGAGGAGAGACCCTTGGTCTTGTGAAGATCAT
ATGCCCCAGTACAGGGGAATGCCAGGTCCAGGAAGCAGGAGTGGGTGGGT
TGGGAAGCAGGGCGGGAAGAGAGTATAGGGGACTTTCGAGATAGNATTTG
AAATGTAAATGAAGAAAATTTTTTTTTTTTAGATTTTAATAAGAAATTTG
TTTGAGTATTTTTTTTTTTTCCCCCCCCCCCCCAGTAGAGTATTGTAGTT
GTTCCGTTTTGTTGTGTTCCCCCCTCTAAAAAAAAAATTTGTAGCTGTGG
GGGTGTGGGAGTAATTATTCCATCTCCGATATCTACTTCTTACAACTTTA
GTTGTTTACATCTGGATTATATAATAAGACTTACTTTTCATTTTTGATTT
TTGCTCTTTCTCTTCGTTTTTCTTACCTCTGATTTTTGTTTTAATGCGTT
ATTTTTTTATAGTTTTTTTCTATGTCCTTCATTCAGTGCGTTCGCTTTTT
TTTTCCCGTTGTGATATCGTTGTCGCGCTATGGTTGTTACTTTTTTTTTC
CCCGTCTTTGGGGAGTTTTCTTTTTTCACATCCCTTGATATTTCTTATTC
TTTATGTAGTATTCTACTTTTTTATTCTTATTTCGCTTATCGTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_f17.b1 MSMg01no184_f17.b1 CHROMAT_FILE:
MSMg01no184_f17.b1 PHD_FILE: MSMg01no184_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:41 2005
         (309 letters)



>mm_chr2_54259272_54259980
          Length = 709

 Score =  559 bits (289), Expect = e-164
 Identities = 301/305 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccacggagatgcttagttgacagataaatatatgtattggagctcagggatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccacggagatgcttagttgacagataaatatatgtattggagctcagggatga 264

                                                                       
Query: 65  aatccaaaggtaaagttggaagtaaaatacatgtaaatgagatttaatctgctccttaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatccaaaggtaaagttggaagtaaaatacatgtaaatgagatttaatctgctccttaaa 324

                                                                       
Query: 125 ttagaaaagaagttggtaatatttgggaaaatctgactgacttttaaggacatttataat 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttagaaaagcagttggtaatatttgggaaaatctgactgacttttaaggacatttataat 384

                                                                       
Query: 185 ttaatctaaaaacccaatagctaatatttagtaaaaacaagtgaaaatgtggatttttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaatctaaaaacccaatagctaatatttagtaaaaacaagtgaaaatgtggatttttac 444

                                                                       
Query: 245 tctatttatgatacctgtaaataaatttgcttatatatgtatgttttgagttttaggttt 304
           |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 445 tctatttatgatacctttaaataaatttgcatatatatgtatgttttgggttttaggttt 504

                
Query: 305 aggat 309
           |||||
Sbjct: 505 aggat 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)